Evidence map›Paper›PMID 21508209›Full record

ArticleThe Journal of nutrition2011

A chemoprotective fish oil- and pectin-containing diet temporally alters gene expression profiles in exfoliated rat colonocytes throughout oncogenesis.

Youngmi Cho, Hyemee Kim, Nancy D Turner, John C Mann, Jiawei Wei, Stella S Taddeo, Laurie A Davidson, Naisyin Wang, Marina Vannucci, Raymond J Carroll and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of nutrition, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  8. Dietary fat and fiber interactively modulate apoptosis and mitochondrial bioenergetic profiles in mouse colon in a site-specific manner.European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) · 2017
    Article
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  16. Chemoprevention in gastrointestinal physiology and disease. Natural products and microbiome.American journal of physiology. Gastrointestinal and liver physiology · 2014
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Youngmi ChoFaculty of Nutrition Texas A&M University, College Station, TX 77843, USA.
Hyemee Kim
Nancy D Turner
John C Mann
Jiawei Wei
Stella S Taddeo
Laurie A Davidson
Naisyin Wang
Marina Vannucci
Raymond J Carroll
Robert S Chapkin
Joanne R Lupton
Texas A&M University · USRice University · USUniversity of Michigan · US

Funding

Nutrition, Biostatistics and BioinformaticsR25CA090301 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI CARROLL, RAYMOND J. · 2001 to 2015
$7.6M
Colonic Cytokinetics and Cell Signaling: Dietary EffectsR01CA059034 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI CHAPKIN, ROBERT STEPHEN · 1995 to 2012
$3.6M
Measurement Error, Nutrition and Breast/Colon CancerR37CA057030 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI CARROLL, RAYMOND J. · 2005 to 2014
$3.3M
Measurement Error, Nutrition, Physical Activity and CancerU01CA057030 · NCI · TEXAS A&M UNIVERSITY · PI CARROLL, RAYMOND J. · 2015 to 2019
$2.8M
Measurement Error, Missing Data and SemiparametricsR01CA074552 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WANG, NAISYIN · 2002 to 2015
$2.2M
Gene expression analysis of coding and non-coding RNAs in colon cancer preventionR01CA129444 · NCI · TEXAS A&M UNIVERSITY · PI CHAPKIN, ROBERT STEPHEN · 2007 to 2015
$2.1M
MEASUREMENT ERROR, NUTRITION AND BREAST/COLON CANCERR01CA057030 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI CARROLL, RAYMOND J. · 1992 to 2004
$1.3M
RESPONSE TO DNA DAMAGE--COLON VS SMALL INTESTINER01CA061750 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI LUPTON, JOANNE R · 1994 to 2003
$906k
Nutrition, Biostatistics & Bioinformatics Training GrantT32CA090301 · NCI · TEXAS A&M UNIVERSITY · PI CARROLL, RAYMOND J. · 2016 to 2020
$712k
MISSING/MISMEASURED VARIABLES--METHODS AND APPLICATIONSR29CA074552 · NCI · TEXAS A&M UNIVERSITY SYSTEM · PI WANG, NAISYIN · 1997 to 2001
$203k
NCI NIH HHS R01 CA057030NCI NIH HHS R01 CA059034NCI NIH HHS R01 CA061750NCI NIH HHS R01 CA074552NCI NIH HHS R01 CA129444NCI NIH HHS R25 CA090301NCI NIH HHS R29 CA074552NCI NIH HHS R37 CA057030NCI NIH HHS T32 CA090301NCI NIH HHS U01 CA057030
6 · The paper itself

Abstract

We have demonstrated that fish oil- and pectin-containing (FO/P) diets protect against colon cancer compared with corn oil and cellulose (CO/C) by upregulating apoptosis and suppressing proliferation. To elucidate the mechanisms whereby FO/P diets induce apoptosis and suppress proliferation during the tumorigenic process, we analyzed the temporal gene expression profiles from exfoliated rat colonocytes. Rats consumed diets containing FO/P or CO/C and were injected with azoxymethane (AOM; 2 times, 15 mg/kg body weight, subcutaneously). Feces collected at initiation (24 h after AOM injection) and at aberrant crypt foci (ACF) (7 wk postinjection) and tumor (28 wk postinjection) stages of colon cancer were used for poly (A)+ RNA extraction. Gene expression signatures were determined using Codelink arrays. Changes in phenotypes (ACF, apoptosis, proliferation, and tumor incidence) were measured to establish the regulatory controls contributing to the chemoprotective effects of FO/P. At initiation, FO/P downregulated the expression of 3 genes involved with cell adhesion and enhanced apoptosis compared with CO/C. At the ACF stage, the expression of genes involved in cell cycle regulation was modulated by FO/P and the zone of proliferation was reduced in FO/P rats compared with CO/C rats. FO/P also increased apoptosis and the expression of genes that promote apoptosis at the tumor endpoint compared with CO/C. We conclude that the effects of chemotherapeutic diets on epithelial cell gene expression can be monitored noninvasively throughout the tumorigenic process and that a FO/P diet is chemoprotective in part due to its ability to affect expression of genes involved in apoptosis and cell cycle regulation throughout all stages of tumorigenesis.

Indexed as

AnimalsAzoxymethaneCell CycleCell ProliferationColonic NeoplasmsDietDietary Fats, UnsaturatedDietary SucroseEnterocytesFecesFish OilsGene Expression ProfilingMaleOligonucleotide Array Sequence AnalysisPectinsRatsAzoxymethaneDietary Fats, UnsaturatedDietary SucroseFish OilsPectinsRNA, Messenger

Identifiers

PMID21508209
PMCPMC3095137
OpenAlexW2150277868

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.