Evidence map›Paper›PMID 21506516›Full record

ArticleACS chemical biology2011

Real-time imaging of Rab5 activity using a prequenched biosensor.

Ke Zhan, Hexin Xie, Jessica Gall, Manlung Ma, Oliver Griesbeck, Ahmad Salehi, Jianghong Rao

Abstract readValidation Study
In one paragraph

Article in ACS chemical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Assessing Rab5 Activation in Health and Disease.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ke ZhanMolecular Imaging Program at Stanford, Department of Radiology, Stanford University School of Medicine, 1201 Welch Road, California 94305-5484, United States.
Hexin Xie
Jessica Gall
Manlung Ma
Oliver Griesbeck
Ahmad Salehi
Jianghong Rao
Stanford University · USMax Planck Institute of Neurobiology · DEVA Palo Alto Health Care System · US

Funding

Subcellular architecture of regulatory protein complexes at the bacterial poleR01GM086196 · NIGMS · STANFORD UNIVERSITY · PI MOERNER, WILLIAM E, SHAPIRO, LUCILLE · 2008 to 2015
$4.7M
NIGMS NIH HHS 1R01GM086196-01NIGMS NIH HHS R01 GM086196
6 · The paper itself

Abstract

A key regulator of receptor-mediated endocytosis, Rab5, plays a pivotal role in cargo receptor internalization, endosomal maturation, and transduction and degradation of internalized signaling molecules and recycling cargo receptor. Stressful conditions within cells lead to increased Rab5 activation, and increasing evidence correlates Rab5 activity abnormalities with certain diseases. Current antibody-based imaging methods cannot distinguish active Rab5 from total Rab5 population and provide dynamic information on magnitude and duration of Rab5 activation in cellular events and pathogenesis. We report here novel molecular imaging probes that specifically target GTP-bound Rab5 associated with the early endosome membrane in live cells and fixed mouse brain tissues. Our Rab5 activity fluorescent biosensor (RAFB) contains the Rab5 binding domain of the Rab5 effector Rabaptin 5, a fluorophore (a quantum dot or fluorescent dye) and a cell-penetrating peptide for live-cell delivery. The quantum dot conjugated RAFB was able to image the elevated Rab5 activity in both the cortex and hippocampi tissues of a Ts65Dn mouse. A prequenched RAFB based on fluorescence resonance energy transfer (FRET) can image cytosolic active Rab5 in single live cells. This novel method should enable imaging of the biological process in which Rab5 activity is regulated in various cellular systems.

Indexed as

Biosensing TechniquesAnimalsBinding SitesBrainCell-Penetrating PeptidesCerebral CortexCytoplasmEndosomesFluorescein-5-isothiocyanateFluorescence Resonance Energy TransferHeLa CellsHippocampusHumansMicePeptidesProtein EngineeringCell-Penetrating PeptidesFluorescein-5-isothiocyanatePeptidesrab5 GTP-Binding ProteinsRecombinant Fusion ProteinsVesicular Transport Proteins

Identifiers

PMID21506516
PMCPMC3684446
OpenAlexW1988693856

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.