Evidence map›Paper›PMID 21504900›Full record

ArticleThe Journal of biological chemistry2011

Trafficking and gating of hyperpolarization-activated cyclic nucleotide-gated channels are regulated by interaction with tetratricopeptide repeat-containing Rab8b-interacting protein (TRIP8b) and cyclic AMP at distinct sites.

Ye Han, Yoav Noam, Alan S Lewis, Johnie J Gallagher, Wytse J Wadman, Tallie Z Baram, Dane M Chetkovich

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  9. IProgress in biophysics and molecular biology · 2021
    Review
  10. Review
  11. Review
  12. Article
  13. Cardiac and neuronal HCN channelopathies.Pflugers Archiv : European journal of physiology · 2020
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. The VAMP-associated protein VAPB is required for cardiac and neuronal pacemaker channel function.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2018
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ye HanDavee Department of Neurology and Clinical Neurosciences, Northwestern University Feinberg School of Medicine, Chicago, Illinois 60611, USA.
Yoav Noam
Alan S Lewis
Johnie J Gallagher
Wytse J Wadman
Tallie Z Baram
Dane M Chetkovich
Northwestern University · USUniversity of California, Irvine · USUniversity of Amsterdam · NL

Funding

Mentoring For Success: Developing Fundamental Skills For Biomedical ResearchR25GM079300 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MCGEE, RICHARD · 2007 to 2020
$6.6M
FEBRILE SEIZURE MODEL--NEURONAL INJURY AND MECHANISMSR01NS035439 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARAM, TALLIE Z. · 1997 to 2018
$3.2M
HCN Channel Trafficking in EpilepsyR01NS059934 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHETKOVICH, DANE M · 2008 to 2017
$3.1M
Febrile Seizure Model - Neuronal Injury and MechanismsR37NS035439 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARAM, TALLIE Z. · 2006 to 2012
$2.6M
The Role of TRIP8b in Neuronal HCN Channel TraffickingF30NS064757 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEWIS, ALAN SETH · 2009 to 2012
$125k
NIGMS NIH HHS R25 GM079300NINDS NIH HHS F30 NS064757NINDS NIH HHS NS05595NINDS NIH HHS NS059934NINDS NIH HHS NS064757NINDS NIH HHS NS35439NINDS NIH HHS R01 NS035439NINDS NIH HHS R01 NS059934NINDS NIH HHS R37 NS035439
6 · The paper itself

Abstract

Ion channel trafficking and gating are often influenced by interactions with auxiliary subunits. Tetratricopeptide repeat-containing Rab8b-interacting protein (TRIP8b) is an auxiliary subunit for neuronal hyperpolarization-activated cyclic nucleotide-gated (HCN) channels. TRIP8b interacts directly with two distinct sites of HCN channel pore-forming subunits to control channel trafficking and gating. Here we use mutagenesis combined with electrophysiological studies to define and distinguish the functional importance of the HCN/TRIP8b interaction sites. Interaction with the last three amino acids of the HCN1 C terminus governed the effect of TRIP8b on channel trafficking, whereas TRIP8b interaction with the HCN1 cyclic nucleotide binding domain (CNBD) affected trafficking and gating. Biochemical studies revealed that direct interaction between TRIP8b and the HCN1 CNBD was disrupted by cAMP and that TRIP8b binding to the CNBD required an arginine residue also necessary for cAMP binding. In accord, increasing cAMP levels in cells antagonized the up-regulation of HCN1 channels mediated by a TRIP8b construct binding the CNBD exclusively. These data illustrate the distinct roles of the two TRIP8b-HCN interaction domains and suggest that TRIP8b and cAMP may directly compete for binding the HCN CNBD to control HCN channel gating, kinetics, and trafficking.

Indexed as

AnimalsCyclic AMPCyclic Nucleotide-Gated Cation ChannelsHEK293 CellsHumansHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsIon Channel GatingMembrane ProteinsMicePeroxinsPotassium ChannelsProtein BindingProtein TransportRatsUp-RegulationCyclic AMPCyclic Nucleotide-Gated Cation ChannelsHCN1 protein, humanHcn1 protein, mouseHcn1 protein, ratHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsMembrane ProteinsPeroxinsPex5l protein, mousePex5l protein, ratPotassium Channels

Identifiers

PMID21504900
PMCPMC3121500
OpenAlexW1985848631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.