Evidence map›Paper›PMID 21504726›Full record

ArticleBiophysical journal2011

Biophysical regulation of histone acetylation in mesenchymal stem cells.

Yuan Li, Julia S Chu, Kyle Kurpinski, Xian Li, Diana M Bautista, Li Yang, K-L Paul Sung, Song Li

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 1 synthesis or guideline pooled it, 170 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Mechanical regulation of cell memory.Nature structural & molecular biology · 2026
    Review
  4. Review
  5. Review
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  7. H3K27ac Is Essential for Human Naive Pluripotency Modulated by m6A-Driven EP300 Expression.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
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  14. Article
  15. Article
  16. Article
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  19. Article
  20. Article

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Yuan LiBioengineering College, Chongqing University, Chongqing, China.
Julia S Chu
Kyle Kurpinski
Xian Li
Diana M Bautista
Li Yang
K-L Paul Sung
Song Li
University of California, Berkeley · USChongqing University · CN

Funding

Tissue Engineered Nanofibrous Vascular GraftR01HL083900 · NHLBI · UNIVERSITY OF CALIFORNIA BERKELEY · PI LI, SONG · 2006 to 2010
$2.0M
Mechanobiology of Mesenchymal Stem CellsR01HL078534 · NHLBI · UNIVERSITY OF CALIFORNIA BERKELEY · PI LI, SONG · 2004 to 2007
$1.2M
NHLBI NIH HHS HL078534NHLBI NIH HHS HL083900NHLBI NIH HHS R01 HL078534NHLBI NIH HHS R01 HL083900
6 · The paper itself

Abstract

Histone deacetylation and acetylation are catalyzed by histone deacetylase (HDAC) and histone acetyltransferase, respectively, which play important roles in the regulation of chromatin remodeling, gene expression, and cell functions. However, whether and how biophysical cues modulate HDAC activity and histone acetylation is not well understood. Here, we tested the hypothesis that microtopographic patterning and mechanical strain on the substrate regulate nuclear shape, HDAC activity, and histone acetylation. Bone marrow mesenchymal stem cells (MSCs) were cultured on elastic membranes patterned with parallel microgrooves 10 μm wide that kept MSCs aligned along the axis of the grooves. Compared with MSCs on an unpatterned substrate, MSCs on microgrooves had elongated nuclear shape, a decrease in HDAC activity, and an increase of histone acetylation. To investigate anisotropic mechanical sensing by MSCs, cells on the elastic micropatterned membranes were subjected to static uniaxial mechanical compression or stretch in the direction parallel or perpendicular to the microgrooves. Among the four types of loads, compression or stretch perpendicular to the microgrooves caused a decrease in HDAC activity, accompanied by the increase in histone acetylation and slight changes of nuclear shape. Knocking down nuclear matrix protein lamin A/C abolished mechanical strain-induced changes in HDAC activity. These results demonstrate that micropattern and mechanical strain on the substrate can modulate nuclear shape, HDAC activity, and histone acetylation in an anisotropic manner and that nuclear matrix mediates mechanotransduction. These findings reveal a new mechanism, to our knowledge, by which extracellular biophysical signals are translated into biochemical signaling events in the nucleus, and they will have significant impact in the area of mechanobiology and mechanotransduction.

Indexed as

Biophysical PhenomenaAcetylationAnisotropyBiomechanical PhenomenaCell Culture TechniquesCell NucleusHistone DeacetylasesHistonesHumansLamin Type AMesenchymal Stem CellsStress, MechanicalHistone DeacetylasesHistoneslamin CLamin Type A

Identifiers

PMID21504726
PMCPMC3077706
OpenAlexW1998901389

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.