Evidence map›Paper›PMID 21502573›Full record

SynthesisCirculation2011

Genetic predictors of fibrin D-dimer levels in healthy adults.

Nicholas L Smith, Jennifer E Huffman, David P Strachan, Jie Huang, Abbas Dehghan, Stella Trompet, Lorna M Lopez, So-Youn Shin, Jens Baumert, Veronique Vitart and 56 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Circulation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 7 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 7 syntheses or guidelines pooled it, 68 citations in OpenAlex.

  1. Pooled it
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  7. Association of Fibrinogen Aα Thr312Ala (rs6050) Polymorphism with Venous Thrombosis and Chronic Thromboembolic Pulmonary Hypertension: A Meta-Analysis.Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis
    Pooled it
  8. Trial
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  18. Thrombo-inflammatory biomarkers and D-dimer in a biracial cohort study.Research and practice in thrombosis and haemostasis · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

66 authors at 1 institution in 1 country.

Nicholas L SmithDepartment of Epidemiology, University of Washington, Seattle 98101, USA. nlsmith@u.washington.edu
Jennifer E Huffman
David P Strachan
Jie Huang
Abbas Dehghan
Stella Trompet
Lorna M Lopez
So-Youn Shin
Jens Baumert
Veronique Vitart
Joshua C Bis
Sarah H Wild
Ann Rumley
Qiong Yang
Andre G Uitterlinden
David J Stott
Gail Davies
Angela M Carter
Barbara Thorand
Ozren Polašek
Barbara McKnight
Harry Campbell
Alicja R Rudnicka
Ming-Huei Chen
Brendan M Buckley
Sarah E Harris
Annette Peters
Drazen Pulanic
Thomas Lumley
Anton J M de Craen
David C Liewald
Christian Gieger
Susan Campbell
Ian Ford
Alan J Gow
Michelle Luciano
David J Porteous
Xiuqing Guo
Naveed Sattar
Albert Tenesa
Mary Cushman
P Eline Slagboom
Peter M Visscher
Tim D Spector
Thomas Illig
Igor Rudan
Edwin G Bovill
Alan F Wright
Wendy L McArdle
Geoffrey Tofler
Albert Hofman
Rudi G J Westendorp
John M Starr
Peter J Grant
Mahir Karakas
Nicholas D Hastie
Bruce M Psaty
James F Wilson
Gordon D O Lowe
Christopher J O'Donnell
Jacqueline C M Witteman
J Wouter Jukema
Ian J Deary
Nicole Soranzo
Wolfgang Koenig
Caroline Hayward
University of Edinburgh · GB

Funding

ZONA-FREE HAMSTER OVA ASSAY AS AN INDICATOR OF MALE FERTILITYM01RR000425 · NCRR · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI ANDERSON, GAIL V · 1985 to 2011
$74.2M
Type 1 Diabetes Genetics ConsortiumU01DK062418 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI RICH, STEPHEN S. · 2002 to 2007
$59.8M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
Genomic Epidemiology of Cardiovascular DiseaseZIAHL006002 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI O'DONNELL, CHRISTOPHER · 2009 to 2015
$8.0M
WGA Study to Identify Genetic Variants Associated with CV Events in CHSR01HL087652 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M · 2007 to 2009
$5.1M
Estrogens and pharmacogenetic risks of venous thrombosis in postmenopausal womenR01HL073410 · NHLBI · UNIVERSITY OF WASHINGTON · PI SMITH, NICHOLAS L · 2004 to 2012
$4.8M
CHS Events Follow-up StudyU01HL080295 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M · 2005 to 2008
$4.6M
Pharmacologic and pharmacogenetic associations with recurrent venous thrombosisR01HL095080 · NHLBI · UNIVERSITY OF WASHINGTON · PI SMITH, NICHOLAS L · 2008 to 2012
$2.9M
Epidemiology of Precursors to Type 2 DiabetesK24DK080140 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MEIGS, JAMES B · 2007 to 2016
$1.9M
SLEEP AND ENTRAINMENT OF SCN FUNCTIONR01HL064278 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI STROHL, KINGMAN PERKINS · 1999 to 2002
$871k
CHS-ULTRASOUND READINGN01HC045133 · HC · GEISINGER HEALTH SYSTEM · PI O'LEARY, DANIEL H. · 1994 to 2000
$155k
CHS RETINAL READING CENTERN01HC075150 · HC · UNIVERSITY OF WISCONSIN MADISON · PI KLEIN, RONALD · 1997 to 2000
–
Biotechnology and Biological Sciences Research Council BB/F019394/1Biotechnology and Biological Sciences Research Council SAG09977Chief Scientist Office CZB/4/276Chief Scientist Office CZB/4/710Medical Research Council G0000934Medical Research Council G0700704Medical Research Council MC_PC_U127561128Medical Research Council MC_QA137934Medical Research Council MC_U127561128Medical Research Council U.1275.00.001(61128)NCRR NIH HHS M01 RR000425NCRR NIH HHS M01-RR00425NHLBI NIH HHS HL073410NHLBI NIH HHS HL095080NHLBI NIH HHS N01 HC015103NHLBI NIH HHS N01 HC025195NHLBI NIH HHS N01 HC035129NHLBI NIH HHS N01 HC045133NHLBI NIH HHS N01 HC055222NHLBI NIH HHS N01 HC075150NHLBI NIH HHS N01 HC085079NHLBI NIH HHS N01 HC085086NHLBI NIH HHS N01-HC-25195NHLBI NIH HHS N01-HC-55222NHLBI NIH HHS N01-HC-75150NHLBI NIH HHS N01-HC-85079NHLBI NIH HHS N01-HC-85086NHLBI NIH HHS N02-HL-6-4278NHLBI NIH HHS R01 HL073410NHLBI NIH HHS R01 HL 087652NHLBI NIH HHS R01 HL087652NHLBI NIH HHS R01 HL095080NHLBI NIH HHS U01 HL080295NIDDK NIH HHS DK063491NIDDK NIH HHS K24 DK080140NIDDK NIH HHS P30 DK063491NIDDK NIH HHS U01 DK062418Wellcome Trust 068545Wellcome Trust 068545/Z/02Wellcome Trust 076113/B/04/ZWellcome Trust 079895Wellcome Trust 079996Wellcome Trust 091746Wellcome Trust 091746/Z/
6 · The paper itself

Abstract

backgroundFibrin fragment D-dimer, one of several peptides produced when crosslinked fibrin is degraded by plasmin, is the most widely used clinical marker of activated blood coagulation. To identity genetic loci influencing D-dimer levels, we performed the first large-scale, genome-wide association search. METHODS AND

resultsA genome-wide investigation of the genomic correlates of plasma D-dimer levels was conducted among 21 052 European-ancestry adults. Plasma levels of D-dimer were measured independently in each of 13 cohorts. Each study analyzed the association between ≈2.6 million genotyped and imputed variants across the 22 autosomal chromosomes and natural-log–transformed D-dimer levels using linear regression in additive genetic models adjusted for age and sex. Among all variants, 74 exceeded the genome-wide significance threshold and marked 3 regions. At 1p22, rs12029080 (P=6.4×10(-52)) was 46.0 kb upstream from F3, coagulation factor III (tissue factor). At 1q24, rs6687813 (P=2.4×10(-14)) was 79.7 kb downstream of F5, coagulation factor V. At 4q32, rs13109457 (P=2.9×10(-18)) was located between 2 fibrinogen genes: 10.4 kb downstream from FGG and 3.0 kb upstream from FGA. Variants were associated with a 0.099-, 0.096-, and 0.061-unit difference, respectively, in natural-log–transformed D-dimer and together accounted for 1.8% of the total variance. When adjusted for nonsynonymous substitutions in F5 and FGA loci known to be associated with D-dimer levels, there was no evidence of an additional association at either locus.

conclusionsThree genes were associated with fibrin D-dimer levels. Of these 3, the F3 association was the strongest, and has not been previously reported.

Indexed as

Genome-Wide Association StudyAdultAgedBlood CoagulationFactor VFemaleFibrin Fibrinogen Degradation ProductsFibrinogenGenetic TestingHumansMaleMiddle AgedReference ValuesThromboplastinWhite PeopleFactor VFibrin Fibrinogen Degradation Productsfibrin fragment DFibrinogenThromboplastin

Identifiers

PMID21502573
PMCPMC3095913
OpenAlexW2095773179

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.