Evidence map›Paper›PMID 21501625›Full record

ArticleJournal of molecular biology2011

Asymmetric assembly of Merkel cell polyomavirus large T-antigen origin binding domains at the viral origin.

Celia J Harrison, Gretchen Meinke, Hyun Jin Kwun, Henry Rogalin, Paul J Phelan, Peter A Bullock, Yuan Chang, Patrick S Moore, Andrew Bohm

Abstract read
In one paragraph

Article in Journal of molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Unlicensed origin DNA melting by MCV and SV40 polyomavirus LT proteins is independent of ATP-dependent helicase activity.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Merkel Cell Polyomavirus Infection and Detection.Journal of visualized experiments : JoVE · 2019
    Article
  17. Merkel cell carcinoma.Nature reviews. Disease primers · 2017
    Review
  18. Merkel cell polyomavirus and Merkel cell carcinoma.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Celia J HarrisonDepartment of Biochemistry, Sackler School of Graduate Biomedical Sciences, Tufts University School of Medicine, Boston, MA 02111, USA.
Gretchen Meinke
Hyun Jin Kwun
Henry Rogalin
Paul J Phelan
Peter A Bullock
Yuan Chang
Patrick S Moore
Andrew Bohm
Tufts University · USUPMC Hillman Cancer Center · US

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
INITIATION OF SV40 DNA REPLICATION AND ITS REGULATIONR01GM055397 · NIGMS · TUFTS UNIVERSITY BOSTON · PI BULLOCK, PETER AUGUSTUS · 1997 to 2010
$3.5M
Role of a New Polyomavirus in Merkel Cell CarcinomaR01CA136806 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MOORE, PATRICK S. · 2009 to 2015
$3.0M
Protein Biomarkers for a New Human Polyomavirus in AIDS-related MalignanciesR01CA136363 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MOORE, PATRICK S. · 2008 to 2015
$2.3M
Emerging Technologies Applied to the Discovery of Human Tumor VirusesR33CA120726 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MOORE, PATRICK S. · 2007 to 2009
$757k
T-antigen Binding to the Merkel Cell Carcinoma Virus OriginR21AI082496 · NIAID · TUFTS UNIVERSITY BOSTON · PI BOHM, ALEX ANDREW · 2009 to 2010
$454k
NCI NIH HHS CA120726NCI NIH HHS CA136363NCI NIH HHS R01 CA136363NCI NIH HHS R01 CA136806NCI NIH HHS R33 CA120726NIAID NIH HHS R21 AI082496NIBIB NIH HHS P30 EB009998NIGMS NIH HHS R01 GM055397NIGMS NIH HHS R01GM055397PHS HHS R21A1082496
6 · The paper itself

Abstract

The double-stranded DNA polyomavirus Merkel cell polyomavirus (MCV) causes Merkel cell carcinoma, an aggressive but rare human skin cancer that most often affects immunosuppressed and elderly persons. As in other polyomaviruses, the large T-antigen of MCV recognizes the viral origin of replication by binding repeating G(A/G)GGC pentamers. The spacing, number, orientation, and necessity of repeats for viral replication differ, however, from other family members such as SV40 and murine polyomavirus. We report here the 2.9 Å crystal structure of the MCV large T-antigen origin binding domain (OBD) in complex with a DNA fragment from the MCV origin of replication. Consistent with replication data showing that three of the G(A/G)GGC-like binding sites near the center of the origin are required for replication, the crystal structure contains three copies of the OBD. This stoichiometry was verified using isothermal titration calorimetry. The affinity for G(A/G)GGC-containing double-stranded DNA was found to be ~740 nM, approximately 8-fold weaker than the equivalent domain in SV40 for the analogous region of the SV40 origin. The difference in affinity is partially attributable to DNA-binding residue Lys331 (Arg154 in SV40). In contrast to SV40, a small protein-protein interface is observed between MCV OBDs when bound to the central region of the origin. This protein-protein interface is reminiscent of that seen in bovine papilloma virus E1 protein. Mutational analysis indicates, however, that this interface contributes little to DNA binding energy.

Indexed as

AnimalsAntigens, Polyomavirus TransformingBase SequenceBinding SitesCarcinoma, Merkel CellCattleCrystallography, X-RayDNA, ViralHumansModels, MolecularMolecular Sequence DataMultiprotein ComplexesMutagenesis, Site-DirectedPolyomavirusProtein ConformationReplication OriginAntigens, Polyomavirus TransformingDNA, ViralMultiprotein Complexes

Identifiers

PMID21501625
PMCPMC3104116
OpenAlexW2137131412

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.