Evidence map›Paper›PMID 21500864›Full record

ArticleJournal of proteome research2011

A comprehensive map of the human urinary proteome.

Arivusudar Marimuthu, Robert N O'Meally, Raghothama Chaerkady, Yashwanth Subbannayya, Vishalakshi Nanjappa, Praveen Kumar, Dhanashree S Kelkar, Sneha M Pinto, Rakesh Sharma, Santosh Renuse and 6 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 195 citations in OpenAlex.

  1. Trial
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  4. Review
  5. Article
  6. Contemporary Perspectives on Chronic Renal Disorders.Chronic diseases and translational medicine · 2025
    Review
  7. Review
  8. Tartronic Acid as a Potential Inhibitor of Pathological Calcium Oxalate Crystallization.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  9. Review
  10. Circulating Proteins as Diagnostic Markers in Gastric Cancer.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Diagnostic Value ofACS omega · 2022
    Article
  17. Review
  18. Article
  19. Review
  20. HBFP: a new repository for human body fluid proteome.Database : the journal of biological databases and curation · 2021
    Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 3 countries.

Arivusudar MarimuthuInstitute of Bioinformatics, International Technology Park, Bangalore 560066, Karnataka, India.
Robert N O'Meally
Raghothama Chaerkady
Yashwanth Subbannayya
Vishalakshi Nanjappa
Praveen Kumar
Dhanashree S Kelkar
Sneha M Pinto
Rakesh Sharma
Santosh Renuse
Renu Goel
Rita Christopher
Bernard Delanghe
Robert N Cole
H C Harsha
Akhilesh Pandey
Institute of Bioinformatics · INAmrita Vishwa Vidyapeetham · INJohns Hopkins Medicine · USJohns Hopkins University · USNational Institute of Mental Health and Neurosciences · INKuvempu University · INManipal Academy of Higher Education · INThermo Fisher Scientific (Germany) · DE

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI Rosalie Wollett · 1985 to 2026
$208.6M
Hopkins Digestive Diseases Research Development CenterR24DK064388 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK · 2003 to 2010
$4.6M
NHLBI PROTEOMICS INITIATIVE-N01HV28180-268028180-268028180N01HV028180 · HV · JOHNS HOPKINS UNIVERSITY · PI VAN EYK, JENNIFER E · 2002 to 2006
–
NCI NIH HHS P30 CA006973NHLBI NIH HHS N01 HV028180NIDDK NIH HHS R24 DK064388Wellcome Trust
6 · The paper itself

Abstract

The study of the human urinary proteome has the potential to offer significant insights into normal physiology as well as disease pathology. The information obtained from such studies could be applied to the diagnosis of various diseases. The high sensitivity, resolution, and mass accuracy of the latest generation of mass spectrometers provides an opportunity to accurately catalog the proteins present in human urine, including those present at low levels. To this end, we carried out a comprehensive analysis of human urinary proteome from healthy individuals using high-resolution Fourier transform mass spectrometry. Importantly, we used the Orbitrap for detecting ions in both MS (resolution 60 000) and MS/MS (resolution 15 000) modes. To increase the depth of our analysis, we characterized both unfractionated as well as lectin-enriched proteins in our experiments. In all, we identified 1,823 proteins with less than 1% false discovery rate, of which 671 proteins have not previously been reported as constituents of human urine. This data set should serve as a comprehensive reference list for future studies aimed at identification and characterization of urinary biomarkers for various diseases.

Indexed as

AdultAgedAmino Acid SequenceBiomarkersChromatography, AffinityFemaleGlycoproteinsHumansLectinsMaleMiddle AgedMolecular Sequence DataPeptide FragmentsProteomeTandem Mass SpectrometryYoung AdultBiomarkersGlycoproteinsLectinsPeptide FragmentsProteome

Identifiers

PMID21500864
PMCPMC4213861
OpenAlexW1964478993

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.