Evidence map›Paper›PMID 21499241›Full record

ArticleNature structural & molecular biology2011

Cryo-EM structure of the ribosome-SecYE complex in the membrane environment.

Jens Frauenfeld, James Gumbart, Eli O van der Sluis, Soledad Funes, Marco Gartmann, Birgitta Beatrix, Thorsten Mielke, Otto Berninghausen, Thomas Becker, Klaus Schulten and 1 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 171 papers.

0numbers the graph read from it
0cells of the map it votes in
171citing papers in PubMed
13.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

171 citing papers in PubMed, 292 citations in OpenAlex.

  1. Article
  2. Design of Fluorescent Membrane Scaffold Proteins for Nanodiscs.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Spatially regulated mRNA translation enables functional membrane protein integration in synthetic cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Sample Preparation for Electron Cryo-Microscopy of Macromolecular Machines.Advances in experimental medicine and biology · 2024
    Article
  13. Do Nanodisc Assembly Conditions Affect Natural Lipid Uptake?Journal of the American Society for Mass Spectrometry · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Integrative illustration of a JCVI-syn3A minimal cell.Journal of integrative bioinformatics · 2022
    Article
  19. Cotranslational Biogenesis of Membrane Proteins in Bacteria.Frontiers in molecular biosciences · 2022
    Review
  20. Review

111 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Jens FrauenfeldGene Center, Department for Biochemistry, University of Munich, Munich, Germany.
James Gumbart
Eli O van der Sluis
Soledad Funes
Marco Gartmann
Birgitta Beatrix
Thorsten Mielke
Otto Berninghausen
Thomas Becker
Klaus Schulten
Roland Beckmann
Center for Integrated Protein Science Munich · DEUniversity of Illinois Urbana-Champaign · USCharité - Universitätsmedizin Berlin · DEUniversidad Nacional Autónoma de México · MX

Funding

WHOLE CELL SIMULATIONP41RR005969 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI STONE, JOHN H · 1990 to 2011
$19.8M
System-Level Simulation of a Bioenergetic MembraneR01GM067887 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2003 to 2018
$4.0M
NCRR NIH HHS P41 RR005969NCRR NIH HHS P41-RR005969NIGMS NIH HHS R01 GM067887NIGMS NIH HHS R01-GM067887
6 · The paper itself

Abstract

The ubiquitous SecY-Sec61 complex translocates nascent secretory proteins across cellular membranes and integrates membrane proteins into lipid bilayers. Several structures of mostly detergent-solubilized Sec complexes have been reported. Here we present a single-particle cryo-EM structure of the SecYEG complex in a membrane environment, bound to a translating ribosome, at subnanometer resolution. Using the SecYEG complex reconstituted in a so-called Nanodisc, we could trace the nascent polypeptide chain from the peptidyltransferase center into the membrane. The reconstruction allowed for the identification of ribosome-lipid interactions. The rRNA helix 59 (H59) directly contacts the lipid surface and appears to modulate the membrane in immediate vicinity to the proposed lateral gate of the protein-conducting channel (PCC). On the basis of our map and molecular dynamics simulations, we present a model of a signal anchor-gated PCC in the membrane.

Indexed as

Cell MembraneCryoelectron MicroscopyEscherichia coliEscherichia coli ProteinsLipoproteins, HDLMembrane ProteinsModels, MolecularProtein TransportRibosomesSEC Translocation ChannelsSignal Recognition ParticleEscherichia coli ProteinsLipoproteins, HDLMembrane ProteinsSecE protein, E coliSEC Translocation ChannelsSecY protein, E coliSignal Recognition Particle

Identifiers

PMID21499241
PMCPMC3412285
OpenAlexW2117213358

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.