Evidence map›Paper›PMID 21498769›Full record

ArticleApplied and environmental microbiology2011

GAP promoter library for fine-tuning of gene expression in Pichia pastoris.

Xiulin Qin, Jiangchao Qian, Gaofeng Yao, Yingping Zhuang, Siliang Zhang, Ju Chu

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 164 citations in OpenAlex.

  1. Systematic optimization ofEngineering microbiology · 2026
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  13. Effect ofPeerJ · 2024
    Article
  14. Promoters in Pichia pastoris: A Toolbox for Fine-Tuned Gene Expression.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
  15. Article
  16. Genetic tools for metabolic engineering ofEngineering microbiology · 2023
    Review
  17. Article
  18. Biosynthesis of High-Active Hemoproteins by the Efficient Heme-Supply Pichia Pastoris Chassis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  19. Article
  20. The advent of plant cells in bioreactors.Frontiers in plant science · 2023
    Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xiulin QinState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.
Jiangchao Qian
Gaofeng Yao
Yingping Zhuang
Siliang Zhang
Ju Chu
East China University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A library of engineered promoters of various strengths is a useful genetic tool that enables the fine-tuning and precise control of gene expression across a continuum of broad expression levels. The methylotrophic yeast Pichia pastoris is a well-established expression host with a large academic and industrial user base. To facilitate manipulation of gene expression spanning a wide dynamic range in P. pastoris, we created a functional promoter library through mutagenesis of the constitutive GAP promoter. Using yeast-enhanced green fluorescent protein (yEGFP) as the reporter, 33 mutants were chosen to form the functional promoter library. The 33 mutants spanned an activity range between ∼0.6% and 19.6-fold of the wild-type promoter activity with an almost linear fluorescence intensity distribution. After an extensive characterization of the library, the broader applicability of the results obtained with the yEGFP reporter was confirmed using two additional reporters (β-galactosidase and methionine adenosyltransferase [MAT]) at the transcription and enzyme activity levels. Furthermore, the utility of the promoter library was tested by investigating the influence of heterologous MAT gene expression levels on cell growth and S-adenosylmethionine (SAM) production. The extensive characterization of the promoter strength enabled identification of the optimal MAT activity (around 1.05 U/mg of protein) to obtain maximal volumetric SAM production. The promoter library permits precise control of gene expression and quantitative assessment that correlates gene expression level with physiologic parameters. Thus, it is a useful toolbox for both basic and applied research in P. pastoris.

Indexed as

Gene ExpressionGene LibraryPromoter Regions, GeneticArtificial Gene FusionDNA, FungalDNA Mutational AnalysisGenes, ReporterGenetic EngineeringGenetics, MicrobialGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)Green Fluorescent ProteinsMolecular Sequence DataMutagenesisPichiaSequence Analysis, DNADNA, Fungalenhanced green fluorescent proteinGlyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)Green Fluorescent Proteins

Identifiers

PMID21498769
PMCPMC3127614
OpenAlexW2115328929

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.