Evidence map›Paper›PMID 21498748›Full record

ArticleApplied and environmental microbiology2011

Novel biphenyl-oxidizing bacteria and dioxygenase genes from a korean tidal mudflat.

Tae Kwon Lee, Jaejin Lee, Woo Jun Sul, Shoko Iwai, Benli Chai, James M Tiedje, Joonhong Park

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Applied and environmental microbiology · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tae Kwon LeeSchool of Civil and Environmental Engineering, Yonsei University, Seoul 120-749, Republic of Korea.
Jaejin Lee
Woo Jun Sul
Shoko Iwai
Benli Chai
James M Tiedje
Joonhong Park

Funding

VOLATILE ORGANIC CONTAMINANTS--QUANTIFYING THEIR MOVEMENT IN THE UNSATURATED ZONEP42ES004911 · NIEHS · MICHIGAN STATE UNIVERSITY · PI Timothy R. Zacharewski · 1989 to 2026
$64.9M
NIEHS NIH HHS P42 ES004911
6 · The paper itself

Abstract

Gene-targeted FLX titanium pyrosequencing integrated with stable isotope probing (SIP) using [(13)C]biphenyl substrate revealed that tidal mudflat sediments harbor novel aromatic ring hydroxylating dioxygenases (ARHD). More than 80% of the detected ARHD genes comprise four clades (0.5 distance) with 49 to 70% amino acid identity to sequences in public databases. The 16S rRNA sequences enriched in the (13)C fraction were from the Betaproteobacteria, bacilli (primarily Paenibacillus-like), and unclassified phyla.

Indexed as

Environmental MicrobiologyBacteriaBiphenyl CompoundsCarbon IsotopesCluster AnalysisDioxygenasesDNA, BacterialIsotope LabelingOxidation-ReductionPhylogenyRepublic of KoreaSequence Analysis, DNASequence Homology, Amino AcidbiphenylBiphenyl CompoundsCarbon IsotopesDioxygenasesDNA, Bacterial

Identifiers

PMID21498748
PMCPMC3127585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.