Evidence map›Paper›PMID 21498667›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2011

HLA-A*7401-mediated control of HIV viremia is independent of its linkage disequilibrium with HLA-B*5703.

Philippa C Matthews, Emily Adland, Jennifer Listgarten, Alasdair Leslie, Nompumelelo Mkhwanazi, Jonathan M Carlson, Mikkel Harndahl, Anette Stryhn, Rebecca P Payne, Anthony Ogwu and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 55 citations in OpenAlex.

  1. HLA-B*14:02-Restricted Env-Specific CD8Journal of virology · 2017
    Trial
  2. Trial
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Role of HIV-specific CD8The Journal of experimental medicine · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 15 institutions in 5 countries.

Philippa C MatthewsDepartment of Paediatrics, University of Oxford, Oxford OX1 3SY, United Kingdom.
Emily Adland
Jennifer Listgarten
Alasdair Leslie
Nompumelelo Mkhwanazi
Jonathan M Carlson
Mikkel Harndahl
Anette Stryhn
Rebecca P Payne
Anthony Ogwu
Kuan-Hsiang Gary Huang
John Frater
Paolo Paioni
Henrik Kloverpris
Pieter Jooste
Dominique Goedhals
Cloete van Vuuren
Dewald Steyn
Lynn Riddell
Fabian Chen
Graz Luzzi
Thambiah Balachandran
Thumbi Ndung'u
Søren Buus
Mary Carrington
Roger Shapiro
David Heckerman
Philip J R Goulder
Science Oxford · GBCentre for the AIDS Programme of Research in South Africa · ZAMicrosoft (United States) · USUniversity of Copenhagen · DKUniversity of Oxford · GBUniversity of the Free State · ZABotswana Harvard AIDS Institute Partnership · BWFrederick National Laboratory for Cancer Research · USHarvard University · USKimberley Hospital · ZALuton and Dunstable Hospital · GBNorthampton General Hospital · GBOxford BioMedica (United Kingdom) · GBRoyal Berkshire Hospital · GBWycombe General Hospital · GB

Funding

Effects of genetic polymorphism in MHC, KIR, and related loci on human diseaseZIABC010791 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CARRINGTON, MARY N. · 2009 to 2025
$18.2M
Optimizing CD8+ T-cell responses against C clade HIV infection in subSaharan AfriR01AI046995 · NIAID · UNIVERSITY OF OXFORD · PI GOULDER, PHILIP J · 2000 to 2014
$6.8M
CCR NIH HHS HHSN261200800001CIntramural NIH HHSMedical Research Council G0501777Medical Research Council G108/626NCI NIH HHS HHSN261200800001ENIAID NIH HHS 2R01AI46995NIAID NIH HHS HHSN272200900045CNIAID NIH HHS R01 AI046995Wellcome Trust
6 · The paper itself

Abstract

The potential contribution of HLA-A alleles to viremic control in chronic HIV type 1 (HIV-1) infection has been relatively understudied compared with HLA-B. In these studies, we show that HLA-A*7401 is associated with favorable viremic control in extended southern African cohorts of >2100 C-clade-infected subjects. We present evidence that HLA-A*7401 operates an effect that is independent of HLA-B*5703, with which it is in linkage disequilibrium in some populations, to mediate lowered viremia. We describe a novel statistical approach to detecting additive effects between class I alleles in control of HIV-1 disease, highlighting improved viremic control in subjects with HLA-A*7401 combined with HLA-B*57. In common with HLA-B alleles that are associated with effective control of viremia, HLA-A*7401 presents highly targeted epitopes in several proteins, including Gag, Pol, Rev, and Nef, of which the Gag epitopes appear immunodominant. We identify eight novel putative HLA-A*7401-restricted epitopes, of which three have been defined to the optimal epitope. In common with HLA-B alleles linked with slow progression, viremic control through an HLA-A*7401-restricted response appears to be associated with the selection of escape mutants within Gag epitopes that reduce viral replicative capacity. These studies highlight the potentially important contribution of an HLA-A allele to immune control of HIV infection, which may have been concealed by a stronger effect mediated by an HLA-B allele with which it is in linkage disequilibrium. In addition, these studies identify a factor contributing to different HIV disease outcomes in individuals expressing HLA-B*5703.

Indexed as

AfricaAllelesCD4 Lymphocyte CountCD8-Positive T-LymphocytesEpitopes, T-LymphocyteFemaleFlow Cytometrygag Gene Products, Human Immunodeficiency VirusHIV-1HIV InfectionsHLA-A AntigensHLA-B AntigensHumansLinkage DisequilibriumMolecular Sequence Datanef Gene Products, Human Immunodeficiency VirusEpitopes, T-Lymphocytegag Gene Products, Human Immunodeficiency VirusHLA-A AntigensHLA-B*57:03 antigenHLA-B Antigensnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1pol Gene Products, Human Immunodeficiency Virusrev Gene Products, Human Immunodeficiency Virusrev protein, Human Immunodeficiency Virus-1

Identifiers

PMID21498667
PMCPMC3738002
OpenAlexW2161762733

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.