Evidence map›Paper›PMID 21494619›Full record

ArticlePloS one2011

Ferritin structure from Mycobacterium tuberculosis: comparative study with homologues identifies extended C-terminus involved in ferroxidase activity.

Garima Khare, Vibha Gupta, Prachi Nangpal, Rakesh K Gupta, Nicholas K Sauter, Anil K Tyagi

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Iron mobilization from intact ferritin: effect of differential redox activity of quinone derivatives with NADH/OJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. The Iron Response ofFrontiers in cellular and infection microbiology · 2022
    Review
  7. Mycobacterium tuberculosis ferritin: a suitable workhorse protein for cryo-EM development.Acta crystallographica. Section D, Structural biology · 2021
    Article
  8. Flavin-mediated reductive iron mobilization from frog M and Mycobacterial ferritins: impact of their size, charge and reactivities with NADH/OJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Frontiers in microbiology · 2018
    Article
  13. Journal of immunology research · 2018
    Article
  14. Article
  15. Systematic Identification ofMolecular & cellular proteomics : MCP · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Fe(2+) substrate transport through ferritin protein cage ion channels influences enzyme activity and biomineralization.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Garima KhareDepartment of Biochemistry, University of Delhi South Campus, New Delhi, India.
Vibha Gupta
Prachi Nangpal
Rakesh K Gupta
Nicholas K Sauter
Anil K Tyagi
University of Delhi · INLawrence Berkeley National Laboratory · US

Funding

LABELIT: Automated Diffraction Analysis for X-ray CrystallographyR01GM077071 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2007 to 2009
$1.0M
NIGMS NIH HHS 1R01GM077071NIGMS NIH HHS R01 GM077071
6 · The paper itself

Abstract

Ferritins are recognized as key players in the iron storage and detoxification processes. Iron acquisition in the case of pathogenic bacteria has long been established as an important virulence mechanism. Here, we report a 3.0 Å crystal structure of a ferritin, annotated as Bacterioferritin B (BfrB), from Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis that continues to be one of the world's deadliest diseases. Similar to the other members of ferritin family, the Mtb BfrB subunit exhibits the characteristic fold of a four-helical bundle that possesses the ferroxidase catalytic centre. We compare the structure of Mtb BfrB with representatives of the ferritin family belonging to the archaea, eubacteria and eukarya. Unlike most other ferritins, Mtb BfrB has an extended C-terminus. To dissect the role of this extended C-terminus, truncated Mtb BfrB was purified and biochemical studies implicate this region in ferroxidase activity and iron release in addition to providing stability to the protein. Functionally important regions in a protein of known 3D-structure can be determined by estimating the degree of conservation of the amino-acid sites with its close homologues. Based on the comparative studies, we identify the slowly evolving conserved sites as well as the rapidly evolving variable sites and analyze their role in relation to structure and function of Mtb BfrB. Further, electrostatic computations demonstrate that although the electrostatic environment of catalytic residues is preserved within the family, extensive variability is exhibited by residues defining the channels and pores, in all likelihood keeping up with the diverse functions executed by these ferritins in varied environments.

Indexed as

Structural Homology, ProteinAmino Acid SequenceBacterial ProteinsCeruloplasminConserved SequenceCrystallography, X-RayCytochrome b GroupFerritinsIronModels, MolecularMolecular Sequence DataMycobacterium tuberculosisOxidation-ReductionProtein BindingProtein DenaturationProtein StabilityBacterial ProteinsbacterioferritinCeruloplasminCytochrome b GroupFerritinsIronProtein Subunits

Identifiers

PMID21494619
PMCPMC3072985
OpenAlexW2069099129

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.