Evidence map›Paper›PMID 21491957›Full record

ArticleBiochemistry2011

Probing domain interactions in soluble guanylate cyclase.

Emily R Derbyshire, Michael B Winter, Mohammed Ibrahim, Sarah Deng, Thomas G Spiro, Michael A Marletta

Abstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Single-particle EM reveals the higher-order domain architecture of soluble guanylate cyclase.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  5. Review
  6. CO, NO and OCoordination chemistry reviews · 2013
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Emily R DerbyshireDepartment of Molecular and Cell Biology, University of California-Berkeley, CA 94720, USA.
Michael B Winter
Mohammed Ibrahim
Sarah Deng
Thomas G Spiro
Michael A Marletta
University of California, Berkeley · USUniversity of Washington · US

Funding

Nitric Oxide Signaling And Soluble Guanylate CyclaseR01GM077365 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARLETTA, MICHAEL A. · 2007 to 2010
$1.0M
NIGMS NIH HHS R01 GM077365
6 · The paper itself

Abstract

Eukaryotic nitric oxide (NO) signaling involves modulation of cyclic GMP (cGMP) levels through activation of the soluble isoform of guanylate cyclase (sGC). sGC is a heterodimeric hemoprotein that contains a Heme-Nitric oxide and OXygen binding (H-NOX) domain, a Per/ARNT/Sim (PAS) domain, a coiled-coil (CC) domain, and a catalytic domain. To evaluate the role of these domains in regulating the ligand binding properties of the heme cofactor of NO-sensitive sGC, we constructed chimeras by swapping the rat β1 H-NOX domain with the homologous region of H-NOX domain-containing proteins from Thermoanaerobacter tengcongensis, Vibrio cholerae, and Caenorhabditis elegans (TtTar4H, VCA0720, and Gcy-33, respectively). Characterization of ligand binding by electronic absorption and resonance Raman spectroscopy indicates that the other rat sGC domains influence the bacterial and worm H-NOX domains. Analysis of cGMP production in these proteins reveals that the chimeras containing bacterial H-NOX domains exhibit guanylate cyclase activity, but this activity is not influenced by gaseous ligand binding to the heme cofactor. The rat-worm chimera containing the atypical sGC Gcy-33 H-NOX domain was weakly activated by NO, CO, and O(2), suggesting that atypical guanylate cyclases and NO-sensitive guanylate cyclases have a common molecular mechanism for enzyme activation. To probe the influence of the other sGC domains on the mammalian sGC heme environment, we generated heme pocket mutants (Pro118Ala and Ile145Tyr) in the β1 H-NOX construct (residues 1-194), the β1 H-NOX-PAS-CC construct (residues 1-385), and the full-length α1β1 sGC heterodimer (β1 residues 1-619). Spectroscopic characterization of these proteins shows that interdomain communication modulates the coordination state of the heme-NO complex and the heme oxidation rate. Taken together, these findings have important implications for the allosteric mechanism of regulation within H-NOX domain-containing proteins.

Indexed as

Catalytic DomainAnimalsCaenorhabditis elegansGuanylate CyclaseHemeKineticsLigandsModels, MolecularMutagenesis, Site-DirectedMutationNitric OxideOxygenProtein MultimerizationProtein Structure, QuaternaryRatsReceptors, Cytoplasmic and NuclearGuanylate CyclaseHemeLigandsNitric OxideOxygenReceptors, Cytoplasmic and NuclearRecombinant Fusion ProteinsSoluble Guanylyl Cyclase

Identifiers

PMID21491957
PMCPMC3096724
OpenAlexW2062191432

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.