Evidence map›Paper›PMID 21490093›Full record

ArticleJournal of virology2011

Spatiotemporally different DNA repair systems participate in Epstein-Barr virus genome maturation.

Atsuko Sugimoto, Teru Kanda, Yoriko Yamashita, Takayuki Murata, Shinichi Saito, Daisuke Kawashima, Hiroki Isomura, Yukihiro Nishiyama, Tatsuya Tsurumi

Abstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 27 citations in OpenAlex.

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  15. Structure-based characterization of multiprotein complexes.Structure (London, England : 1993) · 2014
    Article
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  20. Replication of Epstein-Barr viral DNA.Cold Spring Harbor perspectives in biology · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Atsuko SugimotoDivision of Virology, Aichi Cancer Center Research Institute, Kanokoden, Chikusa-ku, Nagoya 464-8681, Japan.
Teru Kanda
Yoriko Yamashita
Takayuki Murata
Shinichi Saito
Daisuke Kawashima
Hiroki Isomura
Yukihiro Nishiyama
Tatsuya Tsurumi
Aichi Cancer Center · JPNagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Productive replication of Epstein-Barr virus occurs in discrete sites in nuclei, called replication compartments, where viral DNA replication proteins and host homologous recombinational repair (HRR) and mismatch repair (MMR) factors are recruited. Three-dimensional (3D) surface reconstruction imaging clarified the spatial arrangements of these factors within the replication compartments. Subnuclear domains, designated BMRF1 cores, which were highly enriched in viral polymerase processivity factor BMRF1 could be identified inside the replication compartments. Pulse-chase experiments revealed that newly synthesized viral genomes organized around the BMRF1 cores were transferred inward. HRR factors could be demonstrated mainly outside BMRF1 cores, where de novo synthesis of viral DNA was ongoing, whereas MMR factors were found predominantly inside. These results imply that de novo synthesis of viral DNA is coupled with HRR outside the cores, followed by MMR inside cores for quality control of replicated viral genomes. Thus, our approach unveiled a viral genome manufacturing plant.

Indexed as

DNA Mismatch RepairDNA RepairRecombination, GeneticVirus ReplicationAnimalsCell LineCell NucleusDNA ReplicationDNA, ViralGenome, ViralHerpesvirus 4, HumanHumansImage Processing, Computer-AssistedMicroscopy, ConfocalViral ProteinsDNA, ViralViral Proteins

Identifiers

PMID21490093
PMCPMC3126487
OpenAlexW2054663906

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.