Evidence map›Paper›PMID 21489227›Full record

ArticleBMC medical genetics2011

The role of the fat mass and obesity associated gene (FTO) in breast cancer risk.

Virginia Kaklamani, Nengjun Yi, Maureen Sadim, Kalliopi Siziopikou, Kui Zhang, Yanfei Xu, Sarah Tofilon, Surbhi Agarwal, Boris Pasche, Christos Mantzoros

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed, 4 pooled it
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 4 syntheses or guidelines pooled it, 174 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Association between FTO gene polymorphism and cancer risk: evidence from 16,277 cases and 31,153 controls.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2012
    Pooled it
  5. Trial
  6. Methylation marks breast cancer metastasis: The roles of mThe Journal of biological chemistry · 2026
    Review
  7. FTO separation-of-function mutations alter mbioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. FTO in health and disease.Frontiers in cell and developmental biology · 2024
    Review
  19. Review
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Virginia KaklamaniCancer Genetics Program, Division of Hematology/Oncology, Department of Medicine and Robert H, Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, 676 N St Clair st suite 850, Chicago, IL 60611, USA. v-kaklamani@northwestern.edu
Nengjun Yi
Maureen Sadim
Kalliopi Siziopikou
Kui Zhang
Yanfei Xu
Sarah Tofilon
Surbhi Agarwal
Boris Pasche
Christos Mantzoros
Robert H. Lurie Comprehensive Cancer Center of Northwestern UniversityUniversity of Alabama at Birmingham · USCancer Genetics (United States) · USHarvard University · USNorthwestern Memorial Hospital · USNorthwestern University · US

Funding

Bayesian Methods for Mapping Complex Epistatic GenesR01GM069430 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YI, NENGJUN · 2005 to 2013
$2.3M
TGF-beta polymorphisms and breast cancer in familiesR01CA112520 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI PASCHE, BORIS · 2005 to 2013
$2.1M
NCI NIH HHS R01 CA112520NIGMS NIH HHS 2R01GM069430-06NIGMS NIH HHS R01 GM069430
6 · The paper itself

Abstract

backgroundObesity has been shown to increase breast cancer risk. FTO is a novel gene which has been identified through genome wide association studies (GWAS) to be related to obesity. Our objective was to evaluate tissue expression of FTO in breast and the role of FTO SNPs in predicting breast cancer risk.

methodsWe performed a case-control study of 354 breast cancer cases and 364 controls. This study was conducted at Northwestern University. We examined the role of single nucleotide polymorphisms (SNPs) of intron 1 of FTO in breast cancer risk. We genotyped cases and controls for four SNPs: rs7206790, rs8047395, rs9939609 and rs1477196. We also evaluated tissue expression of FTO in normal and malignant breast tissue.

resultsWe found that all SNPs were significantly associated with breast cancer risk with rs1477196 showing the strongest association. We showed that FTO is expressed both in normal and malignant breast tissue. We found that FTO genotypes provided powerful classifiers to predict breast cancer risk and a model with epistatic interactions further improved the prediction accuracy with a receiver operating characteristic (ROC) curves of 0.68.

conclusionIn conclusion we have shown a significant expression of FTO in malignant and normal breast tissue and that FTO SNPs in intron 1 are significantly associated with breast cancer risk. Furthermore, these FTO SNPs are powerful classifiers in predicting breast cancer risk.

Indexed as

AdultAgedAged, 80 and overAlpha-Ketoglutarate-Dependent Dioxygenase FTOBreast NeoplasmsFemaleGenome-Wide Association StudyGenotypeHumansIntronsMiddle AgedOdds RatioPolymorphism, Single NucleotideProteinsRiskAlpha-Ketoglutarate-Dependent Dioxygenase FTOFTO protein, humanProteins

Identifiers

PMID21489227
PMCPMC3089782
OpenAlexW2022129953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.