Evidence map›Paper›PMID 21488990›Full record

ArticleThe European journal of neuroscience2011

Characterization of orderly spatiotemporal patterns of clock gene activation in mammalian suprachiasmatic nucleus.

Nicholas C Foley, Tina Y Tong, Duncan Foley, Joseph Lesauter, David K Welsh, Rae Silver

Abstract read
In one paragraph

Article in The European journal of neuroscience, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Article
  3. On the origin and evolution of the dual oscillator model underlying the photoperiodic clockwork in the suprachiasmatic nucleus.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2024
    Review
  4. Bmal1 integrates circadian function and temperature sensing in the suprachiasmatic nucleus.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Article
  7. Single cell model for re-entrainment to a shifted light cycle.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Timing by rhythms: Daily clocks and developmental rulers.Development, growth & differentiation · 2016
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Nicholas C FoleyDepartment of Cognitive and Neural Systems, Boston University, Boston, MA, USA.
Tina Y Tong
Duncan Foley
Joseph Lesauter
David K Welsh
Rae Silver
Columbia University · USBoston University · USNew School · USUniversity of California, San Diego · US

Funding

PHYSIOLOGICAL DISSECTION OF THE SCNR01NS037919 · NINDS · BARNARD COLLEGE · PI SILVER, RAE · 1998 to 2010
$3.3M
Circadian Clock Cells: Autonomy Persistence and Calcium DependenceR01MH082945 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WELSH, DAVID K · 2008 to 2012
$1.8M
suprachiasmatic nucleus (SCN) networks and efferent signalsR01MH075045 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SILVER, RAE · 2007 to 2011
$1.8M
NIMH NIH HHS MH075045NIMH NIH HHS R01 MH075045NIMH NIH HHS R01 MH082945NIMH NIH HHS R01MH082945NINDS NIH HHS R01 NS037919NINDS NIH HHS R01 NS37919
6 · The paper itself

Abstract

Because we can observe oscillation within individual cells and in the tissue as a whole, the suprachiasmatic nucleus (SCN) presents a unique system in the mammalian brain for the analysis of individual cells and the networks of which they are a part. While dispersed cells of the SCN sustain circadian oscillations in isolation, they are unstable oscillators that require network interactions for robust cycling. Using cluster analysis to assess bioluminescence in acute brain slices from PERIOD2::Luciferase (PER2::LUC) knockin mice, and immunochemistry of SCN from animals harvested at various circadian times, we assessed the spatiotemporal activation patterns of PER2 to explore the emergence of a coherent oscillation at the tissue level. The results indicate that circadian oscillation is characterized by a stable daily cycle of PER2 expression involving orderly serial activation of specific SCN subregions, followed by a silent interval, with substantial symmetry between the left and right side of the SCN. The biological significance of the clusters identified in living slices was confirmed by co-expression of LUC and PER2 in fixed, immunochemically stained brain sections, with the spatiotemporal pattern of LUC expression resembling that revealed in the cluster analysis of bioluminescent slices. We conclude that the precise timing of PER2 expression within individual neurons is dependent on their location within the nucleus, and that small groups of neurons within the SCN give rise to distinctive and identifiable subregions. We propose that serial activation of these subregions is the basis of robustness and resilience of the daily rhythm of the SCN.

Indexed as

Transcriptional ActivationAnimalsBiological ClocksCircadian RhythmCluster AnalysisGene Knock-In TechniquesMiceMice, TransgenicPeriod Circadian ProteinsRecombinant Fusion ProteinsSuprachiasmatic NucleusPer2 protein, mousePeriod Circadian ProteinsRecombinant Fusion Proteins

Identifiers

PMID21488990
PMCPMC3423955
OpenAlexW1759544748

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.