Evidence map›Paper›PMID 21487035›Full record

ArticleCancer research2011

Lung cancer diagnosis from proteomic analysis of preinvasive lesions.

S M Jamshedur Rahman, Adriana L Gonzalez, Ming Li, Erin H Seeley, Lisa J Zimmerman, Xueqiong J Zhang, M Lisa Manier, Sandra J Olson, Ronak N Shah, Alison N Miller and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 71 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The impact of the lung EDRN-CVC on Phase 1, 2, & 3 biomarker validation studies.Cancer biomarkers : section A of Disease markers · 2022
    Article
  8. Article
  9. Article
  10. Detecting the Presence and Progression of Premalignant Lung Lesions via Airway Gene Expression.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Article
  11. Review
  12. Article
  13. Article
  14. [Research Progress of Biomakers Proteomics-based in Lung Cancer].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2015
    Review
  15. Applying computation biology and "big data" to develop multiplex diagnostics for complex chronic diseases such as osteoarthritis.Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals · 2015
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

S M Jamshedur RahmanDivision of Allergy, Pulmonary and Critical Care Medicine, Department of Medicine, Mass Spectrometry Research Center, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-6838, USA.
Adriana L Gonzalez
Ming Li
Erin H Seeley
Lisa J Zimmerman
Xueqiong J Zhang
M Lisa Manier
Sandra J Olson
Ronak N Shah
Alison N Miller
Joe B Putnam
York E Miller
Wilbur A Franklin
William J Blot
David P Carbone
Yu Shyr
Richard M Caprioli
Pierre P Massion
Vanderbilt University · USUniversity of Colorado Denver · USVeterans Health Administration · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Tissue Bank and Biomarkers CoreP50CA058187 · NCI · UNIVERSITY OF COLORADO DENVER · PI MILLER, YORK E · 1992 to 2018
$43.8M
TARGETING NOTCH 3 IN LUNG CANCERP50CA090949 · NCI · VANDERBILT UNIVERSITY · PI MASSION, PIERRE P. · 2001 to 2011
$24.1M
Spatial Analysis of Molecules in Tissue using MALDI-MSR01GM058008 · NIGMS · VANDERBILT UNIVERSITY · PI CAPRIOLI, RICHARD M · 1998 to 2015
$5.8M
Molecular Approaches to Early Detection of Lung CancerR01CA102353 · NCI · VANDERBILT UNIVERSITY · PI MASSION, PIERRE P. · 2005 to 2014
$2.4M
NCI NIH HHS CA102353NCI NIH HHS P30 CA068485NCI NIH HHS P30 CA68485NCI NIH HHS P50 CA058187NCI NIH HHS P50 CA090949NCI NIH HHS P50 CA58187NCI NIH HHS P50 CA 90949NCI NIH HHS R01 CA102353NIGMS NIH HHS 5R01-GM58008NIGMS NIH HHS R01 GM058008
6 · The paper itself

Abstract

Early detection may help improve survival from lung cancer. In this study, our goal was to derive and validate a signature from the proteomic analysis of bronchial lesions that could predict the diagnosis of lung cancer. Using previously published studies of bronchial tissues, we selected a signature of nine matrix-assisted laser desorption ionization mass spectrometry (MALDI MS) mass-to-charge ratio features to build a prediction model diagnostic of lung cancer. The model was based on MALDI MS signal intensity (MALDI score) from bronchial tissue specimens from our 2005 published cohort of 51 patients. The performance of the prediction model in identifying lung cancer was tested in an independent cohort of bronchial specimens from 60 patients. The probability of having lung cancer based on the proteomic analysis of the bronchial specimens was characterized by an area under the receiver operating characteristic curve of 0.77 (95% CI 0.66-0.88) in this validation cohort. Eight of the nine features were identified and validated by Western blotting and immunohistochemistry. These results show that proteomic analysis of endobronchial lesions may facilitate the diagnosis of lung cancer and the monitoring of high-risk individuals for lung cancer in surveillance and chemoprevention trials.

Indexed as

AgedBlotting, WesternEarly Detection of CancerFemaleHumansImmunohistochemistryLung NeoplasmsMaleMiddle AgedNeoplasm ProteinsProteomicsReproducibility of ResultsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationNeoplasm Proteins

Identifiers

PMID21487035
PMCPMC3110721
OpenAlexW2101220375

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.