Evidence map›Paper›PMID 21484844›Full record

ArticlePrenatal diagnosis2011

Using FISH to increase the yield and accuracy of karyotypes from spontaneous abortion specimens.

Vaidehi Jobanputra, Cecilia Esteves, Antonio Sobrino, Stephen Brown, Jennie Kline, Dorothy Warburton

Abstract readEvaluation Study
In one paragraph

Article in Prenatal diagnosis, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Vaidehi JobanputraDepartment of Pathology, Columbia University, New York, NY, USA. vj2004@columbia.edu
Cecilia Esteves
Antonio Sobrino
Stephen Brown
Jennie Kline
Dorothy Warburton

Funding

CTSA: K12 COMPONENTKL2RR024157 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2006 to 2011
$8.9M
Skewed X Inactivation and Reproductive LossR01HD042745 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WARBURTON, DOROTHY P. · 2002 to 2006
$2.3M
Trisomy and ovarian age: An epidemiologic studyR01HD053814 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KLINE, JENNIE KATHERINE · 2008 to 2010
$1.0M
NCRR NIH HHS KL2 RR024157NICHD NIH HHS R01 HD042745NICHD NIH HHS R01 HD053814NICHD NIH HHS R01 HD42 725
6 · The paper itself

Abstract

objectiveCytogenetic analysis of spontaneous abortions is frequently complicated by culture failure and maternal cell contamination (MCC). The objective of the study is to demonstrate that multiplex fluorescence in situ hybridization (FISH) can increase the yield and accuracy of karyotypes from spontaneous abortion specimens.

methodA multiplex interphase FISH probe set was used to analyze two sample sets. (1) Uncultured tissues from 153 abortions samples with a normal 46,XX karyotype and (2) a series of 171 samples that either failed to grow or were contaminated. MCC studies were performed on 70 cultures where both karyotype and FISH indicated a normal female karyotype.

resultsFISH showed 31% (53/171) of the specimens karyotyped as 46,XX were either male or abnormal; 23% (40/118) of these specimens were found to have an abnormal chromosome complement. In specimens with culture failure, FISH showed an abnormal complement in 44.4% (68/153). MCC studies showed 41.49% (29/70) cultures of maternal origin, 45.7% (32/70) fetal, 11.4% (8/70) a maternal/fetal mixture and 1 diploid mole.

conclusionResults demonstrate the utility of a simple FISH panel in increasing the detection rate of abnormal karyotypes. They also reveal the high frequency of overgrowth of maternal cells in cultured specimens from villi after embryonic loss.

Indexed as

In Situ Hybridization, FluorescenceAbortion, SpontaneousAdolescentAdultChromosome AberrationsFemaleFetusHumansKaryotypingMaleMiddle AgedPregnancyYoung Adult

Identifiers

PMID21484844
PMCPMC3791617

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.