Evidence map›Paper›PMID 21484478›Full record

ArticleJournal of neurovirology2011

Synthesis and decay of varicella zoster virus transcripts.

Yevgeniy Azarkh, Lars Dölken, Maria Nagel, Don Gilden, Randall J Cohrs

Abstract read
In one paragraph

Article in Journal of neurovirology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Yevgeniy AzarkhDepartment of Neurology, School of Medicine, University of Colorado School of Medicine, 12700 E 19th Avenue, Box B182, Aurora, CO 80045, USA.
Lars Dölken
Maria Nagel
Don Gilden
Randall J Cohrs
University of Colorado Denver · USLudwig-Maximilians-Universität München · DE

Funding

VARICELLA ZOSTER VIRUS VASCULOPATHY: CHANGING CLINICAL PRACTICEP01AG032958 · NIA · UNIVERSITY OF COLORADO DENVER · PI MAHALINGAM, RAVI · 2009 to 2023
$30.3M
NEUROBIOLOGY OF VARICELLA-ZOSTER VIRUSR01AG006127 · NIA · UNIVERSITY OF COLORADO DENVER · PI GILDEN, DONALD · 1987 to 2014
$4.2M
NEUROVIROLOGY-MOLECULAR BIOLOGYT32NS007321 · NINDS · UNIVERSITY OF COLORADO DENVER · PI GILDEN, DONALD · 1988 to 2014
$2.3M
NEUROBIOLOGY OF VARICELLA ZOSTER VIRUSR37AG006127 · NIA · UNIVERSITY OF COLORADO DENVER · PI GILDEN, DONALD H · 1995 to 2004
$2.3M
Mechanisms by which VZV IE proteins interact with cell antiviral proteins to prevK08NS067070 · NINDS · UNIVERSITY OF COLORADO DENVER · PI NAGEL, MARIA ACENA · 2009 to 2013
$895k
NIA NIH HHS AG006127NIA NIH HHS AG032948NIA NIH HHS P01 AG032958NIA NIH HHS R01 AG006127NIA NIH HHS R37 AG006127NINDS NIH HHS K08 NS067070NINDS NIH HHS NS007321NINDS NIH HHS NS067070NINDS NIH HHS T32 NS007321
6 · The paper itself

Abstract

Varicella zoster virus (VZV) is highly cell-associated. At least 68 VZV open reading frames (ORFs) are transcribed in varying amounts that increase as infection progresses. Using reverse transcriptase PCR, quantification of total and newly synthesized mRNA showed that ongoing VZV DNA replication is required for continued accumulation of VZV ORF 63, 9, and 40 transcripts. Analysis of stability of 4-thiouridine-labeled transcripts of nine VZV ORFs revealed a similar half-life for all VZV ORFs tested. Thus, difference in mRNA synthesis, and not mRNA decay, is the major factor contributing to the difference in the relative abundance of VZV transcripts in infected cells.

Indexed as

RNA StabilityCell Line, TumorChickenpoxDNA, ViralHalf-LifeHerpesvirus 3, HumanHumansOpen Reading FramesPhosphonoacetic AcidReverse Transcriptase Polymerase Chain ReactionRNA, MessengerRNA, ViralThiouridineTranscription, GeneticViral ProteinsVirus ReplicationDNA, ViralPhosphonoacetic AcidRNA, MessengerRNA, ViralThiouridineViral Proteins

Identifiers

PMID21484478
PMCPMC3153418
OpenAlexW2059935976

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.