Evidence map›Paper›PMID 21483860›Full record

ArticlePloS one2011

A conserved cysteine motif is critical for rice ceramide kinase activity and function.

Fang-Cheng Bi, Quan-Fang Zhang, Zhe Liu, Ce Fang, Jian Li, Jian-Bin Su, Jean T Greenberg, Hong-Bin Wang, Nan Yao

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Fang-Cheng BiState Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.
Quan-Fang Zhang
Zhe Liu
Ce Fang
Jian Li
Jian-Bin Su
Jean T Greenberg
Hong-Bin Wang
Nan Yao
Sun Yat-sen University · CNUniversity of Chicago · US

Funding

Molecular Basis of Pathogen-Induced Cell Death in PlantsR01GM054292 · NIGMS · UNIVERSITY OF CHICAGO · PI GREENBERG, JEAN T. · 2001 to 2009
$2.6M
NIGMS NIH HHS R01 GM054292NIGMS NIH HHS R01GM54292
6 · The paper itself

Abstract

backgroundCeramide kinase (CERK) is a key regulator of cell survival in dicotyledonous plants and animals. Much less is known about the roles of CERK and ceramides in mediating cellular processes in monocot plants. Here, we report the characterization of a ceramide kinase, OsCERK, from rice (Oryza sativa spp. Japonica cv. Nipponbare) and investigate the effects of ceramides on rice cell viability. PRINCIPAL

findingsOsCERK can complement the Arabidopsis CERK mutant acd5. Recombinant OsCERK has ceramide kinase activity with Michaelis-Menten kinetics and optimal activity at 7.0 pH and 40°C. Mg2+ activates OsCERK in a concentration-dependent manner. Importantly, a CXXXCXXC motif, conserved in all ceramide kinases and important for the activity of the human enzyme, is critical for OsCERK enzyme activity and in planta function. In a rice protoplast system, inhibition of CERK leads to cell death and the ratio of added ceramide and ceramide-1-phosphate, CERK's substrate and product, respectively, influences cell survival. Ceramide-induced rice cell death has apoptotic features and is an active process that requires both de novo protein synthesis and phosphorylation, respectively. Finally, mitochondria membrane potential loss previously associated with ceramide-induced cell death in Arabidopsis was also found in rice, but it occurred with different timing.

conclusionsOsCERK is a bona fide ceramide kinase with a functionally and evolutionarily conserved Cys-rich motif that plays an important role in modulating cell fate in plants. The vital function of the conserved motif in both human and rice CERKs suggests that the biochemical mechanism of CERKs is similar in animals and plants. Furthermore, ceramides induce cell death with similar features in monocot and dicot plants.

Indexed as

Amino Acid MotifsCysteineOryzaPhosphotransferases (Alcohol Group Acceptor)Plant ProteinsStructure-Activity Relationshipceramide kinaseCysteinePhosphotransferases (Alcohol Group Acceptor)Plant Proteins

Identifiers

PMID21483860
PMCPMC3069040
OpenAlexW2037457981

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.