Evidence map›Paper›PMID 21483845›Full record

ArticlePloS one2011

Genome-wide association study identifies genetic loci associated with iron deficiency.

Christine E McLaren, Chad P Garner, Clare C Constantine, Stela McLachlan, Chris D Vulpe, Beverly M Snively, Victor R Gordeuk, Debbie A Nickerson, James D Cook, Catherine Leiendecker-Foster and 8 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 2 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 2 syntheses or guidelines pooled it, 77 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Functional Iron-Transport Genes-International journal of molecular sciences · 2026
    Article
  4. Article
  5. Mean Corpuscular Volume inJournal of hematology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Ethnic Differences in Iron Status.Advances in nutrition (Bethesda, Md.) · 2021
    Review
  12. Article
  13. Article
  14. Review
  15. The Prevalence of Insomnia and the Link between Iron Metabolism Genes Polymorphisms,International journal of environmental research and public health · 2020
    Article
  16. Article
  17. Article
  18. A decade in psychiatric GWAS research.Molecular psychiatry · 2019
    Review
  19. American journal of physiology. Gastrointestinal and liver physiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 11 institutions in 3 countries.

Christine E McLarenDepartment of Epidemiology, University of California Irvine, Irvine, California, United States of America. cmclaren@uci.edu
Chad P Garner
Clare C Constantine
Stela McLachlan
Chris D Vulpe
Beverly M Snively
Victor R Gordeuk
Debbie A Nickerson
James D Cook
Catherine Leiendecker-Foster
Kenneth B Beckman
John H Eckfeldt
Lisa F Barcellos
Joseph A Murray
Paul C Adams
Ronald T Acton
Anthony A Killeen
Gordon D McLaren
University of Minnesota · USUniversity of California, Berkeley · USUniversity of California, Irvine · USHoward University · USMayo Clinic · USThe University of Melbourne · AUUniversity of Alabama at Birmingham · USUniversity of Kansas · USUniversity of Washington · USWake Forest University · USWestern University · CA

Funding

ZOVIRAX CREAM TO TREAT HERPES LABIALIS IN ADOLESCENTSM01RR000827 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHANG, R JEFFREY · 1985 to 2010
$74.3M
Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
Zevalin Radioimmunotherapy Using a Modified TreatmentM01RR000032 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI RICH, ROBERT R. · 1985 to 2008
$23.6M
UVDM01RR010284 · NCRR · HOWARD UNIVERSITY · PI TAYLOR, ROBERT E. · 1996 to 2010
$17.4M
Labile Iron Pools In Hempglobin S ErythmocytesUH1HL003679 · NHLBI · HOWARD UNIVERSITY · PI GORDEUK, VICTOR R · 1996 to 2004
$3.5M
Iron Status: A Pathway Analysis in Multiple EthnicitiesR01HL083328 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI MCLAREN, CHRISTINE E. · 2006 to 2009
$2.6M
IRON OVERLOAD AND HEREDITARY HEMOCHROMATOSISN01HC005185 · HC · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ECKFELDT, JOHN H · 2000 to 2000
$1.1M
IRON OVERLOAD AND HEREDITARY HEMOCHROMATOSIS-N01HC5192-268005192-268005192N01HC005192 · HC · WAKE FOREST UNIVERSITY · PI REBOUSSIN, DAVID M · 2000 to 2006
$867k
IRON OVERLOAD AND HEREDITARY HEMOCHROMOTOSISN01HC005189 · HC · KAISER FOUNDATION RESEARCH INSTITUTE · PI HARRIS, EMILY L · 2000 to 2000
$500k
IRON OVERLOAD AND HEREDITARY HEMOCHROMATOSIS STUDYN01HC005190 · HC · UNIVERSITY OF CALIFORNIA IRVINE · PI MCLAREN, CHRISTINE E · 2000 to 2000
$338k
IRON OVERLOAD AND HEREDITARY HEMOCHROMOTOSIS STUDYN01HC005188 · HC · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ACTON, RONALD T. · 2000 to 2000
$256k
IRON OVERLOAD AND HEREDITARY HEMOCHROMATOSISN01HC005186 · HC · HOWARD UNIVERSITY · PI GORDEUK, VICTOR R · 2000 to 2000
$223k
NCI NIH HHS P30 CA062203NCRR NIH HHS M01 RR000032NCRR NIH HHS M01-RR00032NCRR NIH HHS M01 RR000827NCRR NIH HHS M01RR 00827-29NCRR NIH HHS M01 RR010284NCRR NIH HHS M01-RR10284NHLBI NIH HHS N01 HC005185NHLBI NIH HHS N01 HC005186NHLBI NIH HHS N01 HC005188NHLBI NIH HHS N01 HC005189NHLBI NIH HHS N01 HC005190NHLBI NIH HHS N01 HC005191NHLBI NIH HHS N01 HC005192NHLBI NIH HHS N01-HC-05185NHLBI NIH HHS N01-HC-05186NHLBI NIH HHS N01-HC-05188NHLBI NIH HHS N01-HC-05189NHLBI NIH HHS N01-HC-05190NHLBI NIH HHS N01-HC-05191NHLBI NIH HHS R01 HL083328NHLBI NIH HHS UH1 HL003679NHLBI NIH HHS UH1-HL03679-05
6 · The paper itself

Abstract

The existence of multiple inherited disorders of iron metabolism in man, rodents and other vertebrates suggests genetic contributions to iron deficiency. To identify new genomic locations associated with iron deficiency, a genome-wide association study (GWAS) was performed using DNA collected from white men aged≥25 y and women≥50 y in the Hemochromatosis and Iron Overload Screening (HEIRS) Study with serum ferritin (SF)≤12 µg/L (cases) and iron replete controls (SF>100 µg/L in men, SF>50 µg/L in women). Regression analysis was used to examine the association between case-control status (336 cases, 343 controls) and quantitative serum iron measures and 331,060 single nucleotide polymorphism (SNP) genotypes, with replication analyses performed in a sample of 71 cases and 161 controls from a population of white male and female veterans screened at a US Veterans Affairs (VA) medical center. Five SNPs identified in the GWAS met genome-wide statistical significance for association with at least one iron measure, rs2698530 on chr. 2p14; rs3811647 on chr. 3q22, a known SNP in the transferrin (TF) gene region; rs1800562 on chr. 6p22, the C282Y mutation in the HFE gene; rs7787204 on chr. 7p21; and rs987710 on chr. 22q11 (GWAS observed P<1.51×10(-7) for all). An association between total iron binding capacity and SNP rs3811647 in the TF gene (GWAS observed P=7.0×10(-9), corrected P=0.012) was replicated within the VA samples (observed P=0.012). Associations with the C282Y mutation in the HFE gene also were replicated. The joint analysis of the HEIRS and VA samples revealed strong associations between rs2698530 on chr. 2p14 and iron status outcomes. These results confirm a previously-described TF polymorphism and implicate one potential new locus as a target for gene identification.

Indexed as

AdultAnemia, Iron-DeficiencyFemaleGenetic LociGenome-Wide Association StudyHemochromatosisHumansIronIron OverloadMaleMiddle AgedPolymorphism, Single NucleotideIron

Identifiers

PMID21483845
PMCPMC3069025
OpenAlexW2135963308

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.