Evidence map›Paper›PMID 21481017›Full record

ArticleMolecular microbiology2011

Expression hierarchy in the Yersinia type III secretion system established through YopD recognition of RNA.

Yuqing Chen, Deborah M Anderson

Abstract read
In one paragraph

Article in Molecular microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Review
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  13. Discovering RNA-Based Regulatory Systems forFrontiers in cellular and infection microbiology · 2018
    Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yuqing ChenDepartment of Veterinary Pathobiology, University of Missouri College of Veterinary Medicine, Columbia, MO 65211, USA.
Deborah M Anderson

Funding

Regulation of Yersenia pestis virulence genes in response to host cell contactR21AI081035 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI ANDERSON, DEBORAH M · 2009 to 2010
$405k
NIAID NIH HHS R21 AI081035NIAID NIH HHS R21AI081035
6 · The paper itself

Abstract

The Yersinia type III secretion system (T3SS) is environmentally responsive to enable its rapid induction upon contact with host cells and is necessary for Yersiniae to establish a replicative niche and cause disease. YopD, a translocator protein, represses the expression of T3SS genes until signalled by environmental cues, a mechanism known as the low calcium response. In this work, we investigated recognition of target genes by Yersinia pestis YopD. Expression of all genes of the T3SS was induced in a yopD mutant, though not to the same degree, with effector Yops most affected. Two, short AU-rich sequence elements up- and downstream of start codons of target genes were necessary but not sufficient for YopD mediated repression. Purified YopD-LcrH bound specifically to target RNAs in vitro with different relative affinities, with effector Yops having greater affinity. Together, the data suggest YopD binds to T3SS transcripts where it may prevent ribosome binding causing accelerated mRNA degradation. This regulatory mechanism may ensure an expression hierarchy during the low calcium response as low affinity YopD targets such as chaperones would be translated prior to high affinity targets such as effector Yops allowing the bacteria another layer of control over Yop translocation during infection.

Indexed as

Bacterial Secretion SystemsBacterial Outer Membrane ProteinsBase SequenceCalciumElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialMutationPlasmidsPolymerase Chain ReactionProtein BindingRibosomesRNA, BacterialRNA, MessengerSequence AlignmentYersinia pestisBacterial Outer Membrane ProteinsBacterial Secretion SystemsCalciumRNA, BacterialRNA, MessengerYopD protein, Yersinia

Identifiers

PMID21481017
PMCPMC4128491

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.