Evidence map›Paper›PMID 21479228›Full record

ArticlePloS one2011

PolyQ repeat expansions in ATXN2 associated with ALS are CAA interrupted repeats.

Zhenming Yu, Yongqing Zhu, Alice S Chen-Plotkin, Dana Clay-Falcone, Leo McCluskey, Lauren Elman, Robert G Kalb, John Q Trojanowski, Virginia M-Y Lee, Vivianna M Van Deerlin and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 2 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 2 syntheses or guidelines pooled it, 98 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Cerebellar ataxia-onset ALS withFrontiers in neurology · 2026
    Article
  6. Article
  7. Spinocerebellar ataxia type 2 followed by amyotrophic lateral sclerosis due to a pure CAG repeat expansion in ATXN2: a case report and literature review.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Review
  8. Observational
  9. Article
  10. Article
  11. Localization of Potential Energy in Hydrogen Bonds of theInternational journal of molecular sciences · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Gene therapy for ALS: A review.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Zhenming YuDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Yongqing Zhu
Alice S Chen-Plotkin
Dana Clay-Falcone
Leo McCluskey
Lauren Elman
Robert G Kalb
John Q Trojanowski
Virginia M-Y Lee
Vivianna M Van Deerlin
Aaron D Gitler
Nancy M Bonini
University of Pennsylvania · USHoward Hughes Medical Institute · US

Funding

Transgenic Mouse Models of Tau PathologiesP01AG017586 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIRGINIA M · 2000 to 2021
$37.3M
UPenn ADCC Biomarker CoreP30AG010124 · NIA · UNIVERSITY OF PENNSYLVANIA · PI XIE, SHARON XIANGWEN · 1991 to 2020
$35.1M
POSTTRANSLATIONAL MODIFICATIONS OF ALPHA SYNUCLEINP01AG009215 · NIA · UNIVERSITY OF PENNSYLVANIA · PI BONINI, NANCY M · 1990 to 2009
$14.1M
TDP-43 Proteinopathies in ALS-DementiaP01AG032953 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIRGINIA M · 2010 to 2014
$5.8M
Molecular Basis of TDP-43 Proteinopathies: Disease Models and MechanismsR01NS065317 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI GITLER, AARON D. · 2009 to 2016
$2.7M
Using yeast cells to define mechanisms of human neurodegenerative diseasesDP2OD004417 · OD · UNIVERSITY OF PENNSYLVANIA · PI GITLER, AARON D. · 2008 to 2008
$2.4M
Regulation of gene expression in frontotemporal dementia: A genome-wide approachK08AG033101 · NIA · UNIVERSITY OF PENNSYLVANIA · PI CHEN-PLOTKIN, ALICE S · 2008 to 2012
$640k
NIA NIH HHS AG-10124NIA NIH HHS AG-17586NIA NIH HHS K08 AG033101NIA NIH HHS K08 AG-033101-01NIA NIH HHS P01 AG009215NIA NIH HHS P01 AG017586NIA NIH HHS P01 AG032953NIA NIH HHS P01 AG-09215NIA NIH HHS P30 AG010124NIH HHS 1DP2OD004417-01NIH HHS DP2 OD004417NINDS NIH HHS 1R01NS065317-01NINDS NIH HHS R01 NS065317
6 · The paper itself

Abstract

Amyotrophic lateral sclerosis (ALS) is a devastating, rapidly progressive disease leading to paralysis and death. Recently, intermediate length polyglutamine (polyQ) repeats of 27-33 in ATAXIN-2 (ATXN2), encoding the ATXN2 protein, were found to increase risk for ALS. In ATXN2, polyQ expansions of ≥ 34, which are pure CAG repeat expansions, cause spinocerebellar ataxia type 2. However, similar length expansions that are interrupted with other codons, can present atypically with parkinsonism, suggesting that configuration of the repeat sequence plays an important role in disease manifestation in ATXN2 polyQ expansion diseases. Here we determined whether the expansions in ATXN2 associated with ALS were pure or interrupted CAG repeats, and defined single nucleotide polymorphisms (SNPs) rs695871 and rs695872 in exon 1 of the gene, to assess haplotype association. We found that the expanded repeat alleles of 40 ALS patients and 9 long-repeat length controls were all interrupted, bearing 1-3 CAA codons within the CAG repeat. 21/21 expanded ALS chromosomes with 3CAA interruptions arose from one haplotype (GT), while 18/19 expanded ALS chromosomes with <3CAA interruptions arose from a different haplotype (CC). Moreover, age of disease onset was significantly earlier in patients bearing 3 interruptions vs fewer, and was distinct between haplotypes. These results indicate that CAG repeat expansions in ATXN2 associated with ALS are uniformly interrupted repeats and that the nature of the repeat sequence and haplotype, as well as length of polyQ repeat, may play a role in the neurological effect conferred by expansions in ATXN2.

Indexed as

Genetic Predisposition to DiseaseAdultAgedAge of OnsetAllelesAmyotrophic Lateral SclerosisAtaxinsBase SequenceCase-Control StudiesCodonHaplotypesHumansMiddle AgedMolecular Sequence DataNerve Tissue ProteinsPeptidesAtaxinsCodonNerve Tissue ProteinsPeptidespolyglutamine

Identifiers

PMID21479228
PMCPMC3066214
OpenAlexW2068096553

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.