Evidence map›Paper›PMID 21479216›Full record

ArticlePloS one2011

Analysis of normal-tumour tissue interaction in tumours: prediction of prostate cancer features from the molecular profile of adjacent normal cells.

Victor Trevino, Mahlet G Tadesse, Marina Vannucci, Fatima Al-Shahrour, Philipp Antczak, Sarah Durant, Andreas Bikfalvi, Joaquin Dopazo, Moray J Campbell, Francesco Falciani

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 4 countries.

Victor TrevinoSchool of Biosciences and IBR, University of Birmingham, Edgbaston, United Kingdom.
Mahlet G Tadesse
Marina Vannucci
Fatima Al-Shahrour
Philipp Antczak
Sarah Durant
Andreas Bikfalvi
Joaquin Dopazo
Moray J Campbell
Francesco Falciani
The Edgbaston Hospital · GBCentro de Investigacion Principe Felipe · ESLaboratoire d'Informatique de Paris-Nord · FRRice University · USRoswell Park Comprehensive Cancer Center · USUniversité de Bordeaux · FRUniversity of Pennsylvania · US

Funding

Bayesian Methods for Genomics with Variable SelectionR01HG003319 · NHGRI · TEXAS A&M UNIVERSITY SYSTEM · PI VANNUCCI, MARINA · 2005 to 2010
$892k
Cancer Research UK C8504/A9488NHGRI NIH HHS R01 HG003319NHGRI NIH HHS R01-HG003319
6 · The paper itself

Abstract

Statistical modelling, in combination with genome-wide expression profiling techniques, has demonstrated that the molecular state of the tumour is sufficient to infer its pathological state. These studies have been extremely important in diagnostics and have contributed to improving our understanding of tumour biology. However, their importance in in-depth understanding of cancer patho-physiology may be limited since they do not explicitly take into consideration the fundamental role of the tissue microenvironment in specifying tumour physiology. Because of the importance of normal cells in shaping the tissue microenvironment we formulate the hypothesis that molecular components of the profile of normal epithelial cells adjacent the tumour are predictive of tumour physiology. We addressed this hypothesis by developing statistical models that link gene expression profiles representing the molecular state of adjacent normal epithelial cells to tumour features in prostate cancer. Furthermore, network analysis showed that predictive genes are linked to the activity of important secreted factors, which have the potential to influence tumor biology, such as IL1, IGF1, PDGF BB, AGT, and TGFβ.

Indexed as

Cell CommunicationGene Expression ProfilingCell Line, TumorCytokinesDisease ProgressionEpithelial CellsGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansIntercellular Signaling Peptides and ProteinsMaleModels, StatisticalMultivariate AnalysisOrgan SpecificityPrincipal Component AnalysisProstateCytokinesIntercellular Signaling Peptides and ProteinsReceptors, Growth Factor

Identifiers

PMID21479216
PMCPMC3068146
OpenAlexW2152833463

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.