Evidence map›Paper›PMID 21478444›Full record

ArticleThe Plant cell2011

The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis.

Carsten Rautengarten, Berit Ebert, Thomas Herter, Christopher J Petzold, Tadashi Ishii, Aindrila Mukhopadhyay, Björn Usadel, Henrik Vibe Scheller

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 134 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. International journal of molecular sciences · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Frontiers in plant science · 2020
    Review
  19. Review
  20. Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Carsten RautengartenJoint BioEnergy Institute, Feedstocks Division, Lawrence Berkeley National Laboratory, Emeryville, California 94608, USA.
Berit Ebert
Thomas Herter
Christopher J Petzold
Tadashi Ishii
Aindrila Mukhopadhyay
Björn Usadel
Henrik Vibe Scheller
Lawrence Berkeley National Laboratory · USJoint BioEnergy Institute · USMax Planck Institute of Molecular Plant Physiology · DEForestry and Forest Products Research Institute · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

L-Ara, an important constituent of plant cell walls, is found predominantly in the furanose rather than in the thermodynamically more stable pyranose form. Nucleotide sugar mutases have been demonstrated to interconvert UDP-Larabinopyranose (UDP-Arap) and UDP-L-arabinofuranose (UDP-Araf) in rice (Oryza sativa). These enzymes belong to a small gene family encoding the previously named Reversibly Glycosylated Proteins (RGPs). RGPs are plant-specific cytosolic proteins that tend to associate with the endomembrane system. In Arabidopsis thaliana, the RGP protein family consists of five closely related members. We characterized all five RGPs regarding their expression pattern and subcellular localizations in transgenic Arabidopsis plants. Enzymatic activity assays of recombinant proteins expressed in Escherichia coli identified three of the Arabidopsis RGP protein family members as UDP-L-Ara mutases that catalyze the formation of UDP-Araf from UDP-Arap. Coimmunoprecipitation and subsequent liquid chromatography-electrospray ionization-tandem mass spectrometry analysis revealed a distinct interaction network between RGPs in different Arabidopsis organs. Examination of cell wall polysaccharide preparations from RGP1 and RGP2 knockout mutants showed a significant reduction in total L-Ara content (12–31%) compared with wild-type plants. Concomitant downregulation of RGP1 and RGP2 expression results in plants almost completely deficient in cell wall–derived L-Ara and exhibiting severe developmental defects.

Indexed as

ArabidopsisArabidopsis ProteinsCarbohydrate MetabolismCarbohydratesCell WallGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantIntramolecular TransferasesMultiprotein ComplexesPlants, Genetically ModifiedProtein TransportRecombinant Fusion ProteinsReverse Transcriptase Polymerase Chain ReactionSubcellular FractionsUridine Diphosphate SugarsArabidopsis ProteinsCarbohydratesIntramolecular TransferasesMultiprotein ComplexesRecombinant Fusion Proteinsuridine diphosphate arabinoseUridine Diphosphate Sugars

Identifiers

PMID21478444
PMCPMC3101560
OpenAlexW2151432279

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.