Evidence map›Paper›PMID 21478197›Full record

ArticleBioinformatics (Oxford, England)2011

A comprehensive protein-centric ID mapping service for molecular data integration.

Hongzhan Huang, Peter B McGarvey, Baris E Suzek, Raja Mazumder, Jian Zhang, Yongxing Chen, Cathy H Wu

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
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  11. Novel metagenomics analysis of stony coral tissue loss disease.bioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Article
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  17. Development of genomic resources for Rhodes grass (Frontiers in plant science · 2023
    Article
  18. Article
  19. Metagenomics: a path to understanding the gut microbiome.Mammalian genome : official journal of the International Mammalian Genome Society · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hongzhan HuangCenter for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA. huang@dbi.udel.edu
Peter B McGarvey
Baris E Suzek
Raja Mazumder
Jian Zhang
Yongxing Chen
Cathy H Wu

Funding

UniProt: A Centralized Protein Sequence and Function ResourceU41HG006104 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI APWEILER, ROLF · 2010 to 2014
$23.5M
NHGRI NIH HHS U41 HG006104
6 · The paper itself

Abstract

motivationIdentifier (ID) mapping establishes links between various biological databases and is an essential first step for molecular data integration and functional annotation. ID mapping allows diverse molecular data on genes and proteins to be combined and mapped to functional pathways and ontologies. We have developed comprehensive protein-centric ID mapping services providing mappings for 90 IDs derived from databases on genes, proteins, pathways, diseases, structures, protein families, protein interaction, literature, ontologies, etc. The services are widely used and have been regularly updated since 2006. AVAILABILITY: www.uniprot.org/mappingandproteininformation-resource.org/pirwww/search/idmapping.shtml CONTACT: huang@dbi.udel.edu.

Indexed as

Databases, ProteinSoftwareInternetProteinsProteins

Identifiers

PMID21478197
PMCPMC3072559

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.