Evidence map›Paper›PMID 21476539›Full record

ArticleBiochemistry2011

Role of the distal hydrogen-bonding network in regulating oxygen affinity in the truncated hemoglobin III from Campylobacter jejuni.

Pau Arroyo Mañez, Changyuan Lu, Leonardo Boechi, Marcelo A Martí, Mark Shepherd, Jayne Louise Wilson, Robert K Poole, F Javier Luque, Syun-Ru Yeh, Darío A Estrin

Abstract readComparative Study
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Ambidentate H-bonding of NO and O2 in heme proteins.Journal of inorganic biochemistry · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Pau Arroyo MañezDepartamento de Química Inorgánica, Analítica, y Química Fisica, INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Ciudad Universitaria , Buenos Aires, Argentina.
Changyuan Lu
Leonardo Boechi
Marcelo A Martí
Mark Shepherd
Jayne Louise Wilson
Robert K Poole
F Javier Luque
Syun-Ru Yeh
Darío A Estrin

Funding

Catalytic and Inhibitory Mechanisms in Indoleamine 2,3-dioxygenaseR01GM086482 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI YEH, SYUN-RU · 2010 to 2013
$1.3M
Biotechnology and Biological Sciences Research Council BB/E010504/1NIGMS NIH HHS R01 GM086482
6 · The paper itself

Abstract

Oxygen affinity in heme-containing proteins is determined by a number of factors, such as the nature and conformation of the distal residues that stabilize the heme bound-oxygen via hydrogen-bonding interactions. The truncated hemoglobin III from Campylobacter jejuni (Ctb) contains three potential hydrogen-bond donors in the distal site: TyrB10, TrpG8, and HisE7. Previous studies suggested that Ctb exhibits an extremely slow oxygen dissociation rate due to an interlaced hydrogen-bonding network involving the three distal residues. Here we have studied the structural and kinetic properties of the G8(WF) mutant of Ctb and employed state-of-the-art computer simulation methods to investigate the properties of the O(2) adduct of the G8(WF) mutant, with respect to those of the wild-type protein and the previously studied E7(HL) and/or B10(YF) mutants. Our data indicate that the unique oxygen binding properties of Ctb are determined by the interplay of hydrogen-bonding interactions between the heme-bound ligand and the surrounding TyrB10, TrpG8, and HisE7 residues.

Indexed as

Bacterial ProteinsCampylobacter jejuniGlycineHemeHistidineHydrogen BondingLigandsMolecular Dynamics SimulationMutagenesis, Site-DirectedOxygenProtein BindingSpectrum Analysis, RamanTruncated HemoglobinsTryptophanTyrosineBacterial ProteinsGlycineHemeHistidineLigandsOxygenTruncated HemoglobinsTryptophanTyrosine

Identifiers

PMID21476539
PMCPMC4535342

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.