Evidence map›Paper›PMID 21475588›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of Isosphaera pallida type strain (IS1B).

Markus Göker, David Cleland, Elizabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia and 23 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Genotype-phenotype correlations within theFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Markus Göker
David Cleland
Elizabeth Saunders
Alla Lapidus
Matt Nolan
Susan Lucas
Nancy Hammon
Shweta Deshpande
Jan-Fang Cheng
Roxane Tapia
Cliff Han
Lynne Goodwin
Sam Pitluck
Konstantinos Liolios
Ioanna Pagani
Natalia Ivanova
Konstantinos Mavromatis
Amrita Pati
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Yun-Juan Chang
Cynthia D Jeffries
John C Detter
Brian Beck
Tanja Woyke
James Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C Kyrpides
Hans-Peter Klenk

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isosphaera pallida (ex Woronichin 1927) Giovannoni et al. 1995 is the type species of the genus Isosphaera. The species is of interest because it was the first heterotrophic bacterium known to be phototactic, and it occupies an isolated phylogenetic position within the Planctomycetaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of a member of the genus Isosphaera and the third of a member of the family Planctomycetaceae. The 5,472,964 bp long chromosome and the 56,340 bp long plasmid with a total of 3,763 protein-coding and 60 RNA genes are part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

aerobicbuddingchemoheterotrophicfilamentousgas vesiclesGEBAgliding motilityGram-negativehot springphototactic cometsPlanctomycetaceaethermophilic

Identifiers

PMID21475588
PMCPMC3072084

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.