Evidence map›Paper›PMID 21474448›Full record

ArticleThe Journal of biological chemistry2011

Structural and functional characterization of Rv2966c protein reveals an RsmD-like methyltransferase from Mycobacterium tuberculosis and the role of its N-terminal domain in target recognition.

Atul Kumar, Kashyap Saigal, Ketan Malhotra, Krishna Murari Sinha, Bhupesh Taneja

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 46 citations in OpenAlex.

  1. A Frameshift Mutation in the MethyltransferaseComputational and structural biotechnology journal · 2026
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  5. Complete list of canonical post-transcriptional modifications in thebioRxiv : the preprint server for biology · 2024
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  9. Complete genome sequence of high-yield strainSynthetic and systems biotechnology · 2020
    Article
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  13. The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis.Acta crystallographica. Section D, Biological crystallography · 2013
    Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Atul KumarInstitute of Genomics and Integrative Biology (Council of Scientific and Industrial Research), Delhi, India.
Kashyap Saigal
Ketan Malhotra
Krishna Murari Sinha
Bhupesh Taneja
Institute of Molecular Medicine · INCouncil of Scientific and Industrial Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nine of ten methylated nucleotides of Escherichia coli 16 S rRNA are conserved in Mycobacterium tuberculosis. All the 10 different methyltransferases are known in E. coli, whereas only TlyA and GidB have been identified in mycobacteria. Here we have identified Rv2966c of M. tuberculosis as an ortholog of RsmD protein of E. coli. We have shown that rv2966c can complement rsmD-deleted E. coli cells. Recombinant Rv2966c can use 30 S ribosomes purified from rsmD-deleted E. coli as substrate and methylate G966 of 16 S rRNA in vitro. Structure determination of the protein shows the protein to be a two-domain structure with a short hairpin domain at the N terminus and a C-terminal domain with the S-adenosylmethionine-MT-fold. We show that the N-terminal hairpin is a minimalist functional domain that helps Rv2966c in target recognition. Deletion of the N-terminal domain prevents binding to nucleic acid substrates, and the truncated protein fails to carry out the m(2)G966 methylation on 16 S rRNA. The N-terminal domain also binds DNA efficiently, a property that may be utilized under specific conditions of cellular growth.

Indexed as

Bacterial ProteinsHistonesMethylationMycobacterium tuberculosisProtein Structure, TertiaryRNA, BacterialRNA, Ribosomal, 16SStructure-Activity RelationshiptRNA MethyltransferasesBacterial ProteinsHistonesHupB protein, Mycobacterium tuberculosisRNA, BacterialRNA, Ribosomal, 16StRNA Methyltransferases

Identifiers

PMID21474448
PMCPMC3103344
OpenAlexW1968147232

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.