Evidence map›Paper›PMID 21473577›Full record

ArticleJournal of the American Chemical Society2011

Criterion for amino acid composition of defensins and antimicrobial peptides based on geometry of membrane destabilization.

Nathan W Schmidt, Abhijit Mishra, Ghee Hwee Lai, Matthew Davis, Lori K Sanders, Dat Tran, Angie Garcia, Kenneth P Tai, Paul B McCray, André J Ouellette and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 212 citations in OpenAlex.

  1. Article
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  10. Biosourced Functional Hydroxybenzoate-Journal of the American Chemical Society · 2025
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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Nathan W SchmidtDepartment of Physics, University of Illinois, Urbana-Champaign, Illinois 61801, USA.
Abhijit Mishra
Ghee Hwee Lai
Matthew Davis
Lori K Sanders
Dat Tran
Angie Garcia
Kenneth P Tai
Paul B McCray
André J Ouellette
Michael E Selsted
Gerard C L Wong
University of Southern California · USUniversity of California, Los Angeles · USUniversity of Illinois Urbana-Champaign · USUniversity of Iowa · US

Funding

Respiratory virus infection in early cystic fibrosis lung diseaseP01HL091842 · NHLBI · UNIVERSITY OF IOWA · PI STOLTZ, DAVID A · 2008 to 2022
$34.2M
Xylitol Enhancement of Bacterial Killing by AirwayP50HL061234 · NHLBI · UNIVERSITY OF IOWA · PI ZABNER, JOSEPH · 1998 to 2007
$13.6M
Antimicrobial Oligomers for BioDefense and Emerging Food Borne Infectious DiseaseU01AI082192 · NIAID · UNIVERSITY OF MASSACHUSETTS AMHERST · PI TEW, GREGORY N. · 2009 to 2013
$7.0M
MOLECULAR ASPECTS OF LEUKOCYTE ANTIMICROBIAL PEPTIDESR37AI022931 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI SELSTED, MICHAEL E · 2000 to 2009
$3.7M
PEPTIDE EFFECTORS OF ENTERIC HOST DEFENSER01DK044632 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OUELLETTE, ANDRE J. · 1993 to 2010
$2.8M
Molecular Ontogeny of Oral Mucosal Resistance to SIVR01DE015517 · NIDCR · UNIVERSITY OF CALIFORNIA-IRVINE · PI SELSTED, MICHAEL E · 2004 to 2007
$2.1M
Physiologic Peptide Cyclization in Myeloid CellsR01AI058129 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SELSTED, MICHAEL E · 2004 to 2008
$1.9M
STUDIES OF ALPHA-DEFENSINS IN PRIMATE INNATE IMMUNITYR01AI059346 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OUELLETTE, ANDRE J. · 2006 to 2010
$1.7M
MOLECULAR ASPECTS OF LEUKOCYTE ANTIMICROBIAL PEPTIDESR01AI022931 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI SELSTED, MICHAEL E · 1986 to 2016
$1.7M
NHLBI NIH HHS P01 HL-091842NHLBI NIH HHS P01 HL091842NHLBI NIH HHS P50 HL061234NHLBI NIH HHS P50 HL-61234NIAID NIH HHS 1UO1 AI082192-01NIAID NIH HHS R01 AI022931NIAID NIH HHS R01 AI058129NIAID NIH HHS R01AI058129NIAID NIH HHS R01 AI059346NIAID NIH HHS R01AI059346NIAID NIH HHS R37 AI022931NIAID NIH HHS R37AI022931NIAID NIH HHS U01 AI082192NIDCR NIH HHS R01 DE015517NIDCR NIH HHS R01DE15517NIDDK NIH HHS R01 DK044632NIDDK NIH HHS R01DK-044632
6 · The paper itself

Abstract

Defensins comprise a potent class of membrane disruptive antimicrobial peptides (AMPs) with well-characterized broad spectrum and selective microbicidal effects. By using high-resolution synchrotron small-angle X-ray scattering to investigate interactions between heterogeneous membranes and members of the defensin subfamilies, α-defensins (Crp-4), β-defensins (HBD-2, HBD-3), and θ-defensins (RTD-1, BTD-7), we show how these peptides all permeabilize model bacterial membranes but not model eukaryotic membranes: defensins selectively generate saddle-splay ("negative Gaussian") membrane curvature in model membranes rich in negative curvature lipids such as those with phosphoethanolamine (PE) headgroups. These results are shown to be consistent with vesicle leakage assays. A mechanism of action based on saddle-splay membrane curvature generation is broadly enabling, because it is a necessary condition for processes such as pore formation, blebbing, budding, and vesicularization, all of which destabilize the barrier function of cell membranes. Importantly, saddle-splay membrane curvature generation places constraints on the amino acid composition of membrane disruptive peptides. For example, we show that the requirement for generating saddle-splay curvature implies that a decrease in arginine content in an AMP can be offset by an increase in both lysine and hydrophobic content. This "design rule" is consistent with the amino acid compositions of 1080 known cationic AMPs.

Indexed as

Amino Acid SequenceAnimalsArginineBacteriaCell MembraneCell Membrane PermeabilityDefensinsLiposomesScattering, Small AngleX-Ray DiffractionArginineDefensinsLiposomes

Identifiers

PMID21473577
PMCPMC3090259
OpenAlexW2050871371

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.