Evidence map›Paper›PMID 21473015›Full record

ArticleNature methods2011

A versatile in vivo system for directed dissection of gene expression patterns.

Daryl M Gohl, Marion A Silies, Xiaojing J Gao, Sheetal Bhalerao, Francisco J Luongo, Chun-Chieh Lin, Christopher J Potter, Thomas R Clandinin

Open access · greenAbstract read
In one paragraph

Article in Nature methods, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed, 241 citations in OpenAlex.

  1. Article
  2. Article
  3. Imprecision in Vision: Lessons From Neural Circuits in the Fly.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  4. Afterimages drive a shared visual motion-reversal illusion inbioRxiv : the preprint server for biology · 2026
    Article
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  7. Sensory processing reformats odor coding around valence and dynamics.bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Twists to Classical Conditioning of AdultCold Spring Harbor protocols · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Broken time reversal symmetry in visual motion detection.bioRxiv : the preprint server for biology · 2024
    Article
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Daryl M GohlDepartment of Neurobiology, Stanford University, Stanford, California, USA.
Marion A Silies
Xiaojing J Gao
Sheetal Bhalerao
Francisco J Luongo
Chun-Chieh Lin
Christopher J Potter
Thomas R Clandinin
Stanford University · USJohns Hopkins University · US

Funding

Dissecting the functional anatomy of the visual system: a new way forwardDP1OD003530 · OD · STANFORD UNIVERSITY · PI CLANDININ, THOMAS ROBERT · 2007 to 2011
$3.9M
How do photoreceptor axons choose appropriate post-synaptic partners?R01EY015231 · NEI · STANFORD UNIVERSITY · PI CLANDININ, THOMAS ROBERT · 2004 to 2010
$2.5M
NEI NIH HHS R01 EY015231NIH HHS DP1 OD003530
6 · The paper itself

Abstract

Tissue-specific gene expression using the upstream activating sequence (UAS)–GAL4 binary system has facilitated genetic dissection of many biological processes in Drosophila melanogaster. Refining GAL4 expression patterns or independently manipulating multiple cell populations using additional binary systems are common experimental goals. To simplify these processes, we developed a convertible genetic platform, the integrase swappable in vivo targeting element (InSITE) system. This approach allows GAL4 to be replaced with any other sequence, placing different genetic effectors under the control of the same regulatory elements. Using InSITE, GAL4 can be replaced with LexA or QF, allowing an expression pattern to be repurposed. GAL4 can also be replaced with GAL80 or split-GAL4 hemi-drivers, allowing intersectional approaches to refine expression patterns. The exchanges occur through efficient in vivo manipulations, making it possible to generate many swaps in parallel. This system is modular, allowing future genetic tools to be easily incorporated into the existing framework.

Indexed as

Gene ExpressionAnimalsBacterial ProteinsBase SequenceDNA-Binding ProteinsDrosophila melanogasterEnhancer Elements, GeneticGene Expression ProfilingLexA Repressor ProteinMolecular Sequence DataRecombination, GeneticRepressor ProteinsSaccharomyces cerevisiae ProteinsSerine EndopeptidasesTranscription FactorsBacterial ProteinsDNA-Binding ProteinsGAL4 protein, S cerevisiaeGAL80 protein, S cerevisiaeLexA Repressor ProteinRepressor ProteinsSaccharomyces cerevisiae ProteinsSerine EndopeptidasesTranscription Factors

Identifiers

PMID21473015
PMCPMC3079545
OpenAlexW2037366394

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.