Evidence map›Paper›PMID 21472955›Full record

ArticleChembiochem : a European journal of chemical biology2011

The HP1a disordered C terminus and chromo shadow domain cooperate to select target peptide partners.

Deanna L Mendez, Daesung Kim, Maksymilian Chruszcz, Gena E Stephens, Wladek Minor, Sepideh Khorasanizadeh, Sarah C R Elgin

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 65 citations in OpenAlex.

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  8. Characterization of the Swi6/HP1 binding motif in its partner protein reveals the basis for the functional divergence of the HP1 family proteins in fission yeast.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
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  19. Biophysical Properties of HP1-Mediated Heterochromatin.Cold Spring Harbor symposia on quantitative biology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Deanna L MendezDepartment of Biology, Washington University, St. Louis, MO 63130, USA.
Daesung Kim
Maksymilian Chruszcz
Gena E Stephens
Wladek Minor
Sepideh Khorasanizadeh
Sarah C R Elgin
Washington University in St. Louis · USUniversity of Virginia · US

Funding

Formation, Structure and Function in HeterochromatinR01GM068388 · NIGMS · WASHINGTON UNIVERSITY · PI ELGIN, SARAH C.R. · 2003 to 2011
$3.9M
Structural Determinants of Chromodomain FunctionR01GM070558 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI KHORASANIZADEH, SEPIDEH · 2005 to 2008
$1.1M
NIGMS NIH HHS GM 070558NIGMS NIH HHS R01 GM068388NIGMS NIH HHS R01 GM070558NIGMS NIH HHS R01 GM 68388
6 · The paper itself

Abstract

Drosophila melanogaster heterochromatin protein 1a (HP1a) is essential for compacted heterochromatin structure and the associated gene silencing. Its chromo shadow domain (CSD) is well known for binding to peptides that contain a PXVXL motif. Heterochromatin protein 2 (HP2) is a non-histone chromosomal protein that associates with HP1a in the pericentric heterochromatin, telomeres, and the fourth chromosome. Using NMR spectroscopy, fluorescence polarization, and site-directed mutagenesis, we identified an LCVKI motif in HP2 that binds to the HP1a CSD. The binding affinity of the HP2 fragment is approximately two orders of magnitude higher than that of peptides from PIWI (with a PRVKV motif), AF10 (with a PLVVL motif), or CG15356 (with LYPLL and LSIVA motifs). To delineate differential interactions of the HP1a CSD, we characterized its structure, backbone dynamics, and dimerization constant. We found that the dimerization constant is bracketed by the affinities of HP2 and PIWI, which dock to the same HP1a homodimer surface. This suggests that HP2, but not PIWI, interaction can drive the homodimerization of HP1a. Interestingly, the integrity of the disordered C-terminal extension (CTE) of HP1a is essential for discriminatory binding, whereas swapping the PXVXL motifs does not confer specificity. Serine phosphorylation at the peptide binding surface of the CSD is thought to regulate heterochromatin assembly. Glutamic acid substitution at these sites destabilizes HP1a dimers, but improves the interaction with both binding partners. Our studies underscore the importance of CSD dimerization and cooperation with the CTE in forming distinct complexes of HP1a.

Indexed as

Drosophila melanogasterAnimalsChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDimerizationModels, MolecularPeptide FragmentsProtein Structure, TertiaryRecombinant ProteinsSubstrate SpecificityChromobox Protein Homolog 5Chromosomal Proteins, Non-HistonePeptide FragmentsRecombinant Proteins

Identifiers

PMID21472955
PMCPMC3154745
OpenAlexW2114088699

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.