Evidence map›Paper›PMID 21471457›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Efficient targeted gene disruption in the soma and germ line of the frog Xenopus tropicalis using engineered zinc-finger nucleases.

John J Young, Jennifer M Cherone, Yannick Doyon, Irina Ankoudinova, Farhoud M Faraji, Andrew H Lee, Catherine Ngo, Dmitry Y Guschin, David E Paschon, Jeffrey C Miller and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 132 citations in OpenAlex.

  1. Review
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  3. Article
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  6. Review
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  8. Article
  9. Review
  10. Knockout of Myostatin by Zinc-finger Nuclease in Sheep Fibroblasts and Embryos.Asian-Australasian journal of animal sciences · 2016
    Article
  11. Article
  12. Research proceedings on amphibian model organisms.Dong wu xue yan jiu = Zoological research · 2016
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

John J YoungDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3200, USA.
Jennifer M Cherone
Yannick Doyon
Irina Ankoudinova
Farhoud M Faraji
Andrew H Lee
Catherine Ngo
Dmitry Y Guschin
David E Paschon
Jeffrey C Miller
Lei Zhang
Edward J Rebar
Philip D Gregory
Fyodor D Urnov
Richard M Harland
Bryan Zeitler
Sangamo BioSciences (United States) · USUniversity of California, Berkeley · US

Funding

A Xenopus tropicalis mutant resourceR01HD054354 · NICHD · SANGER INSTITUTE · PI STEMPLE, DEREK L · 2007 to 2011
$2.0M
NICHD NIH HHS HD054354NICHD NIH HHS R01 HD054354
6 · The paper itself

Abstract

The frog Xenopus, an important research organism in cell and developmental biology, currently lacks tools for targeted mutagenesis. Here, we address this problem by genome editing with zinc-finger nucleases (ZFNs). ZFNs directed against an eGFP transgene in Xenopus tropicalis induced mutations consistent with nonhomologous end joining at the target site, resulting in mosaic loss of the fluorescence phenotype at high frequencies. ZFNs directed against the noggin gene produced tadpoles and adult animals carrying up to 47% disrupted alleles, and founder animals yielded progeny carrying insertions and deletions in the noggin gene with no indication of off-target effects. Furthermore, functional tests demonstrated an allelic series of activity between three germ-line mutant alleles. Because ZFNs can be designed against any locus, our data provide a generally applicable protocol for gene disruption in Xenopus.

Indexed as

AllelesAnimalsAnimals, Genetically ModifiedCarrier ProteinsDeoxyribonucleasesGene TargetingNoggin ProteinXenopusXenopus ProteinsZinc FingersCarrier ProteinsDeoxyribonucleasesNoggin ProteinXenopus Proteins

Identifiers

PMID21471457
PMCPMC3084115
OpenAlexW2030040769

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.