Evidence map›Paper›PMID 21471434›Full record

ArticleScience translational medicine2011

CD44-SLC1A2 gene fusions in gastric cancer.

Jiong Tao, Nian Tao Deng, Kalpana Ramnarayanan, Baohua Huang, Hue Kian Oh, Siew Hong Leong, Seong Soo Lim, Iain Beehuat Tan, Chia Huey Ooi, Jeanie Wu and 11 more

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Article in Science translational medicine, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 61 citations in OpenAlex.

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  18. Glutamate in cancers: from metabolism to signaling.Journal of biomedical research · 2019
    Article
  19. A 5-Gene Prognostic Combination for Predicting Survival of Patients with Gastric Cancer.Medical science monitor : international medical journal of experimental and clinical research · 2019
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 2 countries.

Jiong TaoDepartment of Physiology, Yong Loo Lin School of Medicine, National University of Singapore, 5 Lower Kent Ridge Road, Singapore 119074, Singapore.
Nian Tao Deng
Kalpana Ramnarayanan
Baohua Huang
Hue Kian Oh
Siew Hong Leong
Seong Soo Lim
Iain Beehuat Tan
Chia Huey Ooi
Jeanie Wu
Minghui Lee
Shenli Zhang
Sun Young Rha
Hyun Cheol Chung
Duane T Smoot
Hassan Ashktorab
Oi Lian Kon
Valere Cacheux
Celestial Yap
Nallasivam Palanisamy
Patrick Tan
Duke-NUS Medical School · SGNational Cancer Centre Singapore · SGAgency for Science, Technology and Research · SGHoward University · USUniversity of Michigan–Ann Arbor · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusion genes are chimeric genes formed in cancers through genomic aberrations such as translocations, amplifications, and rearrangements. To identify fusion genes in gastric cancer, we analyzed regions of chromosomal imbalance in a cohort of 106 primary gastric cancers and 27 cell lines derived from gastric cancers. Multiple samples exhibited genomic breakpoints in the 5' region of SLC1A2/EAAT2, a gene encoding a glutamate transporter. Analysis of a breakpoint-positive SNU16 cell line revealed expression of a CD44-SLC1A2 fusion transcript caused by a paracentric chromosomal inversion, which was predicted to produce a truncated but functional SLC1A2 protein. In primary tumors, CD44-SLC1A2 gene fusions were detected in 1 to 2% of gastric cancers, but not in adjacent matched normal gastric tissues. When we specifically silenced CD44-SLC1A2, cellular proliferation, invasion, and anchorage-independent growth were significantly reduced. Conversely, CD44-SLC1A2 overexpression in gastric cells stimulated these pro-oncogenic traits. CD44-SLC1A2 silencing caused significant reductions in intracellular glutamate concentrations and sensitized SNU16 cells to cisplatin, a commonly used chemotherapeutic agent in gastric cancer. We conclude that fusion of the SLC1A2 gene coding region to CD44 regulatory elements likely causes SLC1A2 transcriptional dysregulation, because tumors expressing high SLC1A2 levels also tended to be CD44-SLC1A2-positive. CD44-SLC1A2 may represent a class of gene fusions in cancers that establish a pro-oncogenic metabolic milieu favoring tumor growth and survival.

Indexed as

Blotting, WesternCell Line, TumorCell ProliferationExcitatory Amino Acid Transporter 2Gene Expression Regulation, NeoplasticGene FusionGlutamate Plasma Membrane Transport ProteinsHumansHyaluronan ReceptorsIn Situ Hybridization, FluorescenceRecombinant Fusion ProteinsReverse Transcriptase Polymerase Chain ReactionStomach NeoplasmsTumor Cells, CulturedExcitatory Amino Acid Transporter 2Glutamate Plasma Membrane Transport ProteinsHyaluronan ReceptorsRecombinant Fusion ProteinsSLC1A2 protein, human

Identifiers

PMID21471434
OpenAlexW2121315386

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.