Evidence map›Paper›PMID 21468003›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2011

Comparative genomic integration profiling of Sleeping Beauty transposons mobilized with high efficacy from integrase-defective lentiviral vectors in primary human cells.

Brian Moldt, Csaba Miskey, Nicklas Heine Staunstrup, Andreas Gogol-Döring, Rasmus O Bak, Nynne Sharma, Lajos Mátés, Zsuzsanna Izsvák, Wei Chen, Zoltán Ivics and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 83 citations in OpenAlex.

  1. Trial
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  5. Auto-expansion ofMolecular therapy. Methods & clinical development · 2024
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  9. International journal of molecular sciences · 2023
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  16. Jumping Ahead withViruses · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Brian MoldtDepartment of Human Genetics, University of Aarhus, Aarhus, Denmark.
Csaba Miskey
Nicklas Heine Staunstrup
Andreas Gogol-Döring
Rasmus O Bak
Nynne Sharma
Lajos Mátés
Zsuzsanna Izsvák
Wei Chen
Zoltán Ivics
Jacob Giehm Mikkelsen
Aarhus University · DKMax Delbrück Center · DEUniversity of Debrecen · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been previously shown that integrase-defective HIV-1-based gene vectors can serve, with moderate efficiency, as substrate for DNA transposition by a transiently expressed Sleeping Beauty (SB) transposase. Here, we describe the enhanced gene transfer properties of a HIV-1/SB hybrid vector that allows efficient DNA transposition, facilitated by the hyperactive SB100X transposase, from vector DNA intermediates in primary human cells. Potent transposase-dependent integration of genetic cargo carried by the hybrid HIV-1/SB vector (up to 160-fold above background) is reported in human cell lines as well as in primary human fibroblasts and keratinocytes. The efficiency of transgene integration in context of the newly developed hybrid vector is comparable with that of conventional lentiviral vectors (LVs). Integration profiles of integrating HIV-1-derived vectors and SB transposons mobilized from LVs are investigated by deep sequencing of a large number of integration sites. A significant bias of lentiviral integrations in genes is reported, confirming that biological properties of the viral integration machinery facilitate preferred insertion into actively transcribed genomic regions. In sharp contrast, lentiviral insertions catalyzed by the SB100X transposase are far more random with respect to genes. Based on these properties, HIV-1/SB vectors may become valuable tools for genetic engineering and therapeutic gene transfer.

Indexed as

Base SequenceCell LineDNADNA Transposable ElementsFibroblastsGenetic VectorsGene Transfer TechniquesGenomeHigh-Throughput Nucleotide SequencingHIV-1HumansIntegrasesKeratinocytesSequence Analysis, DNATransgenesTransposasesDNADNA Transposable ElementsIntegrasessleeping beauty transposase, humanTransposases

Identifiers

PMID21468003
PMCPMC3149173
OpenAlexW2090430988

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.