Evidence map›Paper›PMID 21467043›Full record

ArticleThe Journal of biological chemistry2011

The Agrobacterium tumefaciens transcription factor BlcR is regulated via oligomerization.

Yi Pan, Valena Fiscus, Wuyi Meng, Zhida Zheng, Lian-Hui Zhang, Clay Fuqua, Lingling Chen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yi PanIndiana University, Bloomington, Indiana 47405, USA.
Valena Fiscus
Wuyi Meng
Zhida Zheng
Lian-Hui Zhang
Clay Fuqua
Lingling Chen
Indiana University Bloomington · USInstitute of Molecular and Cell Biology · SG

Funding

Synthesis and function of a unipolar expolysaccharide in AgrobacteriumR01GM080546 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI FUQUA, WILLIAM C · 2007 to 2011
$1.3M
NIGMS NIH HHS R01 GM080546NIGMS NIH HHS R01-GM80546
6 · The paper itself

Abstract

The Agrobacterium tumefaciens BlcR is a member of the emerging isocitrate lyase transcription regulators that negatively regulates metabolism of γ-butyrolactone, and its repressing function is relieved by succinate semialdehyde (SSA). Our crystal structure showed that BlcR folded into the DNA- and SSA-binding domains and dimerized via the DNA-binding domains. Mutational analysis identified residues, including Phe(147), that are important for SSA association; BlcR(F147A) existed as tetramer. Two BlcR dimers bound to target DNA and in a cooperative manner, and the distance between the two BlcR-binding sequences in DNA was critical for BlcR-DNA association. Tetrameric BlcR(F147A) retained DNA binding activity, and importantly, this activity was not affected by the distance separating the BlcR-binding sequences in DNA. SSA did not dissociate tetrameric BlcR(F147A) or BlcR(F147A)-DNA. As well as in the SSA-binding site, Phe(147) is located in a structurally flexible loop that may be involved in BlcR oligomerization. We propose that SSA regulates BlcR DNA-binding function via oligomerization.

Indexed as

4-ButyrolactoneAgrobacterium tumefaciensAmino Acid SubstitutionBacterial ProteinsDNA, BacterialMutation, MissensePeptide MappingProtein MultimerizationRepressor ProteinsResponse Elements4-ButyrolactoneBacterial ProteinsDNA, BacterialRepressor Proteins

Identifiers

PMID21467043
PMCPMC3121482
OpenAlexW1976616697

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.