Evidence map›Paper›PMID 21465523›Full record

ArticleJournal of cellular biochemistry2011

Nonsense suppressor therapies rescue peroxisome lipid metabolism and assembly in cells from patients with specific PEX gene mutations.

Patricia K Dranchak, Erminia Di Pietro, Ann Snowden, Nathan Oesch, Nancy E Braverman, Steven J Steinberg, Joseph G Hacia

Open access · greenAbstract read
In one paragraph

Article in Journal of cellular biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Suppressor tRNA in gene therapy.Science China. Life sciences · 2024
    Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Absence of p.R50XDisease models & mechanisms · 2020
    Article
  10. Serum starvation enhances nonsense mutation readthrough.Journal of molecular medicine (Berlin, Germany) · 2019
    Article
  11. Functional Studies on NovelFrontiers in genetics · 2019
    Article
  12. Article
  13. Article
  14. Peroxisome biogenesis disorders.Translational science of rare diseases · 2016
    Article
  15. Article
  16. Clinical potential of ataluren in the treatment of Duchenne muscular dystrophy.Degenerative neurological and neuromuscular disease · 2016
    Review
  17. Article
  18. Nonsense suppression therapies in ocular genetic diseases.Cellular and molecular life sciences : CMLS · 2015
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Patricia K DranchakDepartment of Biochemistry and Molecular Biology, University of Southern California, Los Angeles, California, USA.
Erminia Di Pietro
Ann Snowden
Nathan Oesch
Nancy E Braverman
Steven J Steinberg
Joseph G Hacia
Kennedy Krieger Institute · USMontreal Children's Hospital · CAUniversity of Southern California · US

Funding

RNA Programmed Translation RecodingR01GM072447 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BUTCHER, SAMUEL E · 2005 to 2016
$2.6M
Comparative Genomics of Peroxisomal Lipid MetabolismR01GM072477 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HACIA, JOSEPH G · 2005 to 2009
$1.8M
NINDS Exploratory/Developmental Projects in Translational ResearchR21NS064572 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BRAVERMAN, NANCY ELISE, HACIA, JOSEPH G · 2008 to 2009
$412k
EXTRAMURAL RESEARCH FACILITIES CONTRUCTION PROJECTC06CA062528 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KEDES, LAURENCE H · 1993 to 1994
–
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR010600 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KEDES, LAURENCE H · 1994 to 1994
–
RESEARCH FACILITIES IMPROVEMENT PROGRAM AND REMODELINGC06RR014514 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KEDES, LAURENCE H · 1999 to 1999
–
NCI NIH HHS C06 CA062528NCI NIH HHS CA62528-01NCRR NIH HHS C06 RR014514NCRR NIH HHS RR10600-01NCRR NIH HHS RR14514-01NIGMS NIH HHS GM072447NIGMS NIH HHS R01 GM072447NIGMS NIH HHS R01 GM072477NINDS NIH HHS NS064572NINDS NIH HHS R21 NS064572
6 · The paper itself

Abstract

Peroxisome biogenesis disorders (PBDs) are multisystemic autosomal recessive disorders resulting from mutations in PEX genes required for normal peroxisome assembly and metabolic activities. Here, we evaluated the potential effectiveness of aminoglycoside G418 (geneticin) and PTC124 (ataluren) nonsense suppression therapies for the treatment of PBD patients with disease-causing nonsense mutations. PBD patient skin fibroblasts producing stable PEX2 or PEX12 nonsense transcripts and Chinese hamster ovary (CHO) cells with a Pex2 nonsense allele all showed dramatic improvements in peroxisomal very long chain fatty acid catabolism and plasmalogen biosynthesis in response to G418 treatments. Cell imaging assays provided complementary confirmatory evidence of improved peroxisome assembly in G418-treated patient fibroblasts. In contrast, we observed no appreciable rescue of peroxisome lipid metabolism or assembly for any patient fibroblast or CHO cell culture treated with various doses of PTC124. Additionally, PTC124 did not show measurable nonsense suppression in immunoblot assays that directly evaluated the read-through of PEX7 nonsense alleles found in PBD patients with rhizomelic chondrodysplasia punctata type 1 (RCDP1). Overall, our results support the continued development of safe and effective nonsense suppressor therapies that could benefit a significant subset of individuals with PBDs. Furthermore, we suggest that the described cell culture assay systems could be useful for evaluating and screening for novel nonsense suppressor therapies.

Indexed as

AllelesAnimalsCHO CellsChondrodysplasia Punctata, RhizomelicCodon, NonsenseCricetinaeCricetulusFemaleFibroblastsGentamicinsHumansLipid MetabolismMembrane ProteinsOxadiazolesPeroxisomal Biogenesis Factor 2Peroxisomal Disordersantibiotic G 418atalurenCodon, NonsenseGentamicinsMembrane ProteinsOxadiazolesPeroxisomal Biogenesis Factor 2Peroxisomal Targeting Signal 2 ReceptorPEX12 protein, humanPEX2 protein, humanPEX7 protein, humanPlasmalogensReceptors, Cytoplasmic and Nuclear

Identifiers

PMID21465523
PMCPMC3136445
OpenAlexW1982156836

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.