Evidence map›Paper›PMID 21459128›Full record

ArticleBiochimica et biophysica acta2011

A T/C polymorphism in the GPX4 3'UTR affects the selenoprotein expression pattern and cell viability in transfected Caco-2 cells.

Hannah Gautrey, Fergus Nicol, Alan A Sneddon, Judith Hall, John Hesketh

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. The Role of rs713041 Glutathione Peroxidase 4 (International journal of molecular sciences · 2022
    Pooled it
  2. Article
  3. Review
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  5. Review
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  11. Personalised nutrition: how far has nutrigenomics progressed?European journal of clinical nutrition · 2013
    Review
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  13. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Hannah GautreyInstitute for Cell and Molecular Biosciences, Newcastle University, Framlington Place, Newcastle upon Tyne, NE2 4HH, UK.
Fergus Nicol
Alan A Sneddon
Judith Hall
John Hesketh
Newcastle University · GBUniversity of Aberdeen · GB

Funding

Wellcome TrustWellcome Trust 081380/Z/06/Z
6 · The paper itself

Abstract

backgroundSynthesis of selenoproteins such as glutathione peroxidases (GPx) requires a specific tRNA and a stem-loop structure in the 3'untranslated region (3'UTR) of the mRNA. A common single nucleotide polymorphism occurs in the GPX4 gene in a region corresponding to the 3'UTR.

methodsThe two variant 3'UTR sequences were linked to sequences from a selenoprotein reporter gene (iodothyronine deiodinase) and expressed in Caco-2 cells. Clones expressing comparable levels of deiodinase (assessed by real-time PCR) were selected and their response to tert-butyl hydroperoxide assessed by cell viability and measurement of reactive oxygen species. Selenoprotein expression was assessed by real-time PCR, enzyme activity and immunoassay.

resultsWhen selenium supply was low, cells overexpressing the C variant 3'UTR showed lower viability after oxidative challenge, increased levels of reactive oxygen species and lower GPx activity and SelH mRNA expression compared to cells overexpressing the T variant. After selenium supplementation, cell viability and GPx4 expression were higher in the cells overexpressing the C variant. Expression of transgenes incorporating the T/C variant GPX4 (rs713041) sequences in Caco-2 cells leads to alterations in both cell viability after an oxidative challenge and selenoprotein expression. This suggests that the two variants compete differently in the selenoprotein hierarchy. GENERAL SIGNIFICANCE: The data provide evidence that the T/C variant GPX4 (rs713041) alters the pattern of selenoprotein synthesis if selenium intake is low. Further work is required to assess the impact on disease susceptibility.

Indexed as

Polymorphism, Genetic3' Untranslated RegionsCaco-2 CellsCell SurvivalGene Expression Regulation, EnzymologicGlutathione PeroxidaseHumansPhospholipid Hydroperoxide Glutathione PeroxidaseReverse Transcriptase Polymerase Chain ReactionSeleniumSelenoproteinsTrace ElementsTransfection3' Untranslated RegionsGlutathione PeroxidasePhospholipid Hydroperoxide Glutathione PeroxidaseSeleniumSelenoproteinsTrace Elements

Identifiers

PMID21459128
PMCPMC3793862
OpenAlexW2013915720

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.