ArticleDevelopmental biology2011
A genetic map of Xenopus tropicalis.
Article in Developmental biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
34 citing papers in PubMed.
- Article
- New insights into Xenopus sex chromosome genomics from the Marsabit clawed frog X. borealis.Journal of evolutionary biology · 2022Article
- Three-dimensional folding dynamics of the Xenopus tropicalis genome.Nature genetics · 2021Article
- Article
- Bridging the Gap between Vertebrate Cytogenetics and Genomics with Single-Chromosome Sequencing (ChromSeq).Genes · 2021Review
- A Molecular Cytogenetic Map of Scallop (Patinopecten yessoensis).Marine biotechnology (New York, N.Y.) · 2019Article
- Sequential Turnovers of Sex Chromosomes in African Clawed Frogs (G3 (Bethesda, Md.) · 2016Article
- Identification and characterization of Xenopus tropicalis common progenitors of Sertoli and peritubular myoid cell lineages.Biology open · 2016Article
- Towards the bridging of molecular genetics data across Xenopus species.BMC genomics · 2016Article
- Article
- Coexistence of Y, W, and Z sex chromosomes in Xenopus tropicalis.Proceedings of the National Academy of Sciences of the United States of America · 2015Article
- Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes.Proceedings of the National Academy of Sciences of the United States of America · 2015Article
- Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.PloS one · 2015Article
- Inbreeding Ratio and Genetic Relationships among Strains of the Western Clawed Frog, Xenopus tropicalis.PloS one · 2015Article
- Sp8 regulates inner ear development.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
- Multiple sex chromosomes in the light of female meiotic drive in amniote vertebrates.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2014Article
- Article
- RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.Genome research · 2013Article
- A large pseudoautosomal region on the sex chromosomes of the frog Silurana tropicalis.Genome biology and evolution · 2013Article
- Genomic dynamics of transposable elements in the western clawed frog (Silurana tropicalis).Genome biology and evolution · 2013Article
Corrections and comments
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Authors and funding
21 authors.
Funding
Abstract
We present a genetic map for Xenopus tropicalis, consisting of 2886 Simple Sequence Length Polymorphism (SSLP) markers. Using a bioinformatics-based strategy, we identified unique SSLPs within the X. tropicalis genome. Scaffolds from X. tropicalis genome assembly 2.0 (JGI) were scanned for Simple Sequence Repeats (SSRs); unique SSRs were then tested for amplification and polymorphisms using DNA from inbred Nigerian and Ivory Coast individuals. Thus identified, the SSLPs were genotyped against a mapping cross panel of DNA samples from 190 F2 individuals. Nearly 4000 SSLPs were genotyped, yielding a 2886-marker genetic map consisting of 10 major linkage groups between 73 and 132cM in length, and 4 smaller linkage groups between 7 and 40cM. The total effective size of the map is 1658cM, and the average intermarker distance for each linkage group ranged from 0.27 to 0.75cM. Fluorescence In Situ Hybridization (FISH) was carried out using probes for genes located on mapped scaffolds to assign linkage groups to chromosomes. Comparisons of this map with the X. tropicalis genome Assembly 4.1 (JGI) indicate that the map provides representation of a minimum of 66% of the X. tropicalis genome, incorporating 758 of the approximately 1300 scaffolds over 100,000bp. The genetic map and SSLP marker database constitute an essential resource for genetic and genomic analyses in X. tropicalis.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.