Evidence map›Paper›PMID 21458438›Full record

ArticleDevelopmental biology2011

DIF-1 regulates Dictyostelium basal disc differentiation by inducing the nuclear accumulation of a bZIP transcription factor.

Yoko Yamada, Beatriz Nuñez-Corcuera, Jeffrey G Williams

Open access · hybridAbstract read
In one paragraph

Article in Developmental biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yoko YamadaCollege of Life Sciences, Welcome Trust Building, University of Dundee, Dow St., Dundee, UK.
Beatriz Nuñez-Corcuera
Jeffrey G Williams
University of Dundee · GB

Funding

Wellcome TrustWellcome Trust 053640/Z
6 · The paper itself

Abstract

Exposure of monolayer Dictyostelium cells to the signalling polyketide DIF-1 causes DimB, a bZIPtranscription factor, to accumulate in the nucleus where it induces prestalk gene expression. Here we analyse DimB signalling during normal development. In slugs DimB is specifically nuclear enriched in the pstB cells; a cluster of vital dye-staining cells located on the ventral surface of the posterior, prespore region. PstB cells move at culmination, to form the lower cup and the outer basal disc of the fruiting body, and DimB retains a high nuclear concentration in both these tissues. In a dimB null (dimB-) strain there are very few pstB or lower cup cells, as detected by neutral red staining, and it is known that the outer basal disc is absent or much reduced. In the dimB- strain ecmB, a marker of pstB differentiation, is not DIF inducible. Furthermore, ChIP analysis shows that DimB binds to the ecmB promoter in DIF-induced cells. These results suggest that the differentiation of pstB cells is caused by a high perceived level of DIF-1 signalling, leading to nuclear localization of DimB and direct activation of cell type-specific gene expression.

Indexed as

AnimalsBasic-Leucine Zipper Transcription FactorsCell DifferentiationCell NucleusChromatin ImmunoprecipitationDictyosteliumExtracellular Matrix ProteinsGene ExpressionGreen Fluorescent ProteinsHexanonesMicroscopy, ConfocalMovementMutationProtein BindingProtozoan ProteinsReverse Transcriptase Polymerase Chain Reaction1-((3,5-dichloro)-2,6-dihydroxy-4-methoxyphenyl)-1-hexanoneBasic-Leucine Zipper Transcription FactorsecmB protein, DictyosteliumExtracellular Matrix ProteinsGreen Fluorescent ProteinsHexanonesProtozoan Proteins

Identifiers

PMID21458438
PMCPMC3107940
OpenAlexW2016170687

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.