Evidence map›Paper›PMID 21455294›Full record

ArticlePloS one2011

Novel regulator MphX represses activation of phenol hydroxylase genes caused by a XylR/DmpR-type regulator MphR in Acinetobacter calcoaceticus.

Haiying Yu, Zixin Peng, Yuhua Zhan, Jin Wang, Yongliang Yan, Ming Chen, Wei Lu, Shuzhen Ping, Wei Zhang, Zhonglin Zhao and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Haiying YuCollege of Biological Sciences, China Agricultural University, Beijing, China.
Zixin Peng
Yuhua Zhan
Jin Wang
Yongliang Yan
Ming Chen
Wei Lu
Shuzhen Ping
Wei Zhang
Zhonglin Zhao
Shuying Li
Masahiro Takeo
Min Lin
Chinese Academy of Agricultural Sciences · CNBiotechnology Research Institute · CNNational Center for Gene Research · CNUniversity of Hyogo · JP

Funding

Louisiana SURE ProgramR25AA021304 · NIAAA · LSU HEALTH SCIENCES CENTER · PI GREGORY, PAULA ELIZABETH, MOLINA, PATRICIA E. · 2012 to 2016
$436k
NIAAA NIH HHS R25 AA021304
6 · The paper itself

Abstract

Acinetobacter calcoaceticus PHEA-2 utilizes phenol as its sole carbon and energy source and has a multi-component phenol hydroxylase-encoding gene operon (mphKLMNOP) for phenol degradation. Two additional genes, mphR and mphX, were found upstream and downstream of mphKLMNOP, respectively. The mphR gene encodes a XylR/DmpR-type regulator-like protein and is transcribed in the opposite direction to mphKLMNOP. The mphX gene is transcribed in the same direction as mphKLMNOP and encodes a protein with 293 amino acid residues showing weak identity with some unknown proteins encoded in the meta-cleavage pathway gene clusters for aromatic compound degradation. Disruption of mphR by homologous recombination resulted in the loss of phenol degradation while disruption of mphX caused significantly faster phenol degradation than in the wild type strain. Transcriptional assays for mphK, mphR, and mphX revealed that mphR activated mphKLMNOP transcription in the presence of phenol, but mphX partially repressed this activation. Gel mobility-shift assay demonstrated a direct interaction of MphR with the mphK promoter region. These results indicate the involvement of a novel repressor protein MphX in transcriptional regulation of phenol hydroxylase genes caused by a XylR/DmpR-type regulator MphR.

Indexed as

Acinetobacter calcoaceticusBacterial ProteinsElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialMixed Function OxygenasesBacterial ProteinsMixed Function Oxygenasesphenol 2-monooxygenase

Identifiers

PMID21455294
PMCPMC3063778
OpenAlexW1993678766

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.