Evidence map›Paper›PMID 21454642›Full record

ArticleThe Journal of biological chemistry2011

The roles of DNA polymerases κ and ι in the error-free bypass of N2-carboxyalkyl-2'-deoxyguanosine lesions in mammalian cells.

Bifeng Yuan, Changjun You, Nisana Andersen, Yong Jiang, Masaaki Moriya, Timothy R O'Connor, Yinsheng Wang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
  3. HMGB3 and SUB1 Bind to and Facilitate the Repair ofJournal of the American Chemical Society · 2024
    Article
  4. LC-MS/MS for Assessing the Incorporation and Repair ofChemical research in toxicology · 2022
    Article
  5. Review
  6. DNA Polymerase η Promotes the Transcriptional Bypass ofJournal of the American Chemical Society · 2021
    Article
  7. The roles of polymerases ν and θ in replicative bypass ofThe Journal of biological chemistry · 2020
    Article
  8. The Impact of Minor-GrooveACS chemical biology · 2019
    Article
  9. Review
  10. DNA replication studies ofThe Journal of biological chemistry · 2019
    Article
  11. Article
  12. Mechanism of DNA alkylation-induced transcriptional stalling, lesion bypass, and mutagenesis.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Posttranslational Regulation of Human DNA Polymerase ι.The Journal of biological chemistry · 2015
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Bifeng YuanFrom the Department of Chemistry, University of California, Riverside, California 92521, USA.
Changjun You
Nisana Andersen
Yong Jiang
Masaaki Moriya
Timothy R O'Connor
Yinsheng Wang
University of California, Riverside · USCity Of Hope National Medical Center · USState University of New York · USWuhan University · CN

Funding

Chemistry and Biology of DNA CarboxyalkylationR01DK082779 · NIDDK · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI WANG, YINSHENG · 2009 to 2016
$3.0M
Mechanism of Mammalian Translesion DNA synthesisR01ES018833 · NIEHS · STATE UNIVERSITY NEW YORK STONY BROOK · PI MORIYA, MASAAKI · 2010 to 2014
$1.4M
NIDDK NIH HHS R01 DK082779NIDDK NIH HHS R01DK082779NIEHS NIH HHS R01 ES018833
6 · The paper itself

Abstract

To counteract the deleterious effects of DNA damage, cells are equipped with specialized polymerases to bypass DNA lesions. Previous biochemical studies revealed that DinB family DNA polymerases, including Escherichia coli DNA polymerase IV and human DNA polymerase κ, efficiently incorporate the correct nucleotide opposite some N(2)-modified 2'-deoxyguanosine derivatives. Herein, we used shuttle vector technology and demonstrated that deficiency in Polk or Poli in mouse embryonic fibroblast (MEF) cells resulted in elevated frequencies of G→T and G→A mutations at N(2)-(1-carboxyethyl)-2'-deoxyguanosine (N(2)-CEdG) and N(2)-carboxymethyl-2'-deoxyguanosine (N(2)-CMdG) sites. Steady-state kinetic measurements revealed that human DNA polymerase ι preferentially inserts the correct nucleotide, dCMP, opposite N(2)-CEdG lesions. In contrast, no mutation was found after the N(2)-CEdG- and N(2)-CMdG-bearing plasmids were replicated in POLH-deficient human cells or Rev3-deficient MEF cells. Together, our results revealed that, in mammalian cells, both polymerases κ and ι are necessary for the error-free bypass of N(2)-CEdG and N(2)-CMdG. However, in the absence of polymerase κ or ι, other translesion synthesis polymerase(s) could incorporate nucleotide(s) opposite these lesions but would do so inaccurately.

Indexed as

AnimalsCell LineDeoxyguanosineDNA-Binding ProteinsDNA DamageDNA-Directed DNA PolymeraseDNA Polymerase iotaDNA RepairHumansMiceY-Family DNA PolymerasesDeoxyguanosineDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Polymerase iotaPOLK protein, humanPolk protein, mouseREV3L protein, humanREV3L protein, mouseY-Family DNA Polymerases

Identifiers

PMID21454642
PMCPMC3093824
OpenAlexW2157548007

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.