Evidence map›Paper›PMID 21454597›Full record

ArticleThe Journal of biological chemistry2011

Spatial phosphoprotein profiling reveals a compartmentalized extracellular signal-regulated kinase switch governing neurite growth and retraction.

Yingchun Wang, Feng Yang, Yi Fu, Xiahe Huang, Wei Wang, Xinning Jiang, Marina A Gritsenko, Rui Zhao, Matthew E Monore, Olivier C Pertz and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Posttranslational Regulation of Mammalian Sulfur Amino Acid Metabolism.International journal of molecular sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Yingchun WangDepartment of Pathology and Moores Cancer Center, University of California, San Diego, La Jolla, California 92093, USA.
Feng Yang
Yi Fu
Xiahe Huang
Wei Wang
Xinning Jiang
Marina A Gritsenko
Rui Zhao
Matthew E Monore
Olivier C Pertz
Samuel O Purvine
Daniel J Orton
Jon M Jacobs
David G Camp
Richard D Smith
Richard L Klemke
Environmental Molecular Sciences Laboratory · USInstitute of Genetics and Developmental Biology · CNPacific Northwest National Laboratory · USUniversity of California, San Diego · USChinese Academy of Sciences · CN

Funding

WORKSHOP AND TRAINING ACTIVITIESP41RR018522 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI BELOV, MIKHAIL · 2003 to 2011
$25.1M
Survival Mechanisms of Invasive Carcinoma CellsR01CA097022 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KLEMKE, RICHARD L. · 2003 to 2017
$4.6M
Mechanisms of Lamellipodia Growth &RetractionR01GM068487 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KLEMKE, RICHARD L. · 2003 to 2011
$2.3M
NCI NIH HHS CA097022NCI NIH HHS R01 CA097022NCRR NIH HHS P41 RR018522NCRR NIH HHS RR018522NIGMS NIH HHS GM068487NIGMS NIH HHS R01 GM068487
6 · The paper itself

Abstract

Brain development and spinal cord regeneration require neurite sprouting and growth cone navigation in response to extension and collapsing factors present in the extracellular environment. These external guidance cues control neurite growth cone extension and retraction processes through intracellular protein phosphorylation of numerous cytoskeletal, adhesion, and polarity complex signaling proteins. However, the complex kinase/substrate signaling networks that mediate neuritogenesis have not been investigated. Here, we compare the neurite phosphoproteome under growth and retraction conditions using neurite purification methodology combined with mass spectrometry. More than 4000 non-redundant phosphorylation sites from 1883 proteins have been annotated and mapped to signaling pathways that control kinase/phosphatase networks, cytoskeleton remodeling, and axon/dendrite specification. Comprehensive informatics and functional studies revealed a compartmentalized ERK activation/deactivation cytoskeletal switch that governs neurite growth and retraction, respectively. Our findings provide the first system-wide analysis of the phosphoprotein signaling networks that enable neurite growth and retraction and reveal an important molecular switch that governs neuritogenesis.

Indexed as

Cell LineExtracellular Signal-Regulated MAP KinasesHumansMAP Kinase Signaling SystemNerve Tissue ProteinsNeuritesPhosphoproteinsExtracellular Signal-Regulated MAP KinasesNerve Tissue ProteinsPhosphoproteins

Identifiers

PMID21454597
PMCPMC3093891
OpenAlexW2023488851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.