Evidence map›Paper›PMID 21454479›Full record

ArticleThe Journal of biological chemistry2011

Nuclear Hat1p complex (NuB4) components participate in DNA repair-linked chromatin reassembly.

Zhongqi Ge, Huanyu Wang, Mark R Parthun

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Metabolomic and Proteomic Changes inInternational journal of molecular sciences · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. KATapulting toward Pluripotency and Cancer.Journal of molecular biology · 2017
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. RNAi screening identifies HAT1 as a potential drug target in esophageal squamous cell carcinoma.International journal of clinical and experimental pathology · 2014
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Zhongqi GeDepartment of Molecular and Cellular Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA.
Huanyu Wang
Mark R Parthun

Funding

Type B Histone Acetyltransferases and the Assembly of Chromatin StructureR01GM062970 · NIGMS · OHIO STATE UNIVERSITY · PI PARTHUN, MARK R · 2001 to 2018
$5.1M
NIGMS NIH HHS GM62970NIGMS NIH HHS R01 GM062970
6 · The paper itself

Abstract

Chromatin is disassembled and reassembled during DNA repair. To assay chromatin reassembly accompanying DNA double strand break repair, ChIP analysis can be used to monitor the presence of histone H3 near the lesion. The chromatin assembly factor Asf1p, as well as the acetylation of histone H3 lysine 56, have been shown to promote chromatin reassembly when DNA double strand break repair is complete. Using Gal-HO-mediated double strand break repair, we have tested each of the components of the nuclear Hat1p-containing type B histone acetyltransferase complex (NuB4) and have found that they can affect repair-linked chromatin reassembly but that their contributions are not equivalent. In particular, deletion of the catalytic subunit, Hat1p, caused a significant defect in chromatin reassembly. In addition, loss of the histone chaperone Hif1p, when combined with an allele of H3 that mutates lysines 14 and 23 to arginine, has a pronounced effect on chromatin reassembly that is similar to that observed in an asf1Δ. The role of Hat1p and Hif1p is at least partially redundant with the role of Asf1p. Consistent with a more prominent role for Hif1p in chromatin reassembly than either Hat1p or Hat2p, Hif1p exists in complex(es) independent of Hat1p and Hat2p and influences the activity of an H3-specific histone acetyltransferase activity. Our data directly demonstrate the role of the nuclear HAT1 complex (NuB4) components in DNA repair-linked chromatin reassembly.

Indexed as

DNA RepairAcetylationAllelesCatalysisCell NucleusChromatinChromatin ImmunoprecipitationDNA DamageEndonucleasesHistone AcetyltransferasesHistone ChaperonesHistonesNuclear ProteinsProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsChromatinEndonucleasesHif1 protein, S cerevisiaeHistone Acetyltransferaseshistone acetyltransferase type B complexHistone ChaperonesHistonesNuclear ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID21454479
PMCPMC3089522

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.