ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2011
Development and application of a whole-genome simple sequence repeat panel for high-throughput genotyping in soybean.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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30 citing papers in PubMed, 48 citations in OpenAlex.
- The current state of Japanese soybean breeding using DNA marker technology.Breeding science · 2026Article
- A mutation of GRAS SCL14 gene confers moderate sensitivity to the herbicide bentazon in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genetic dissection of soybean lodging tolerance in recombinant inbred-line populations of major Japanese and modern US varieties.Breeding science · 2025Article
- A single-nucleotide insertion in Rxp confers durable resistance to bacterial pustule in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Assessing genetic diversity and geographical differentiation in a global collection of wild soybean (Glycine soja Sieb. et Zucc.) and assigning a mini-core collection.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024Article
- MutantBreeding science · 2023Article
- A novel QTL associated with tolerance to cold-induced seed cracking in the soybean cultivar Toyomizuki.Breeding science · 2023Article
- Identification and validation of quantitative trait loci associated with seed yield in soybean.Breeding science · 2021Article
- Identification of a cytochrome P450 hydroxylase, CYP81E22, as a causative gene for the high sensitivity of soybean to herbicide bentazon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- A Soybean Deletion Mutant That Moderates the Repression of Flowering by Cool Temperatures.Frontiers in plant science · 2020Article
- A QTL associated with high seed coat cracking rate of a leading Japanese soybean variety.Breeding science · 2019Article
- Evaluation of the resistance effect of QTLs derived from wild soybean (Breeding science · 2019Article
- Effect of change from a determinate to a semi-determinate growth habit on the yield and lodging resistance of soybeans in the northeast region of Japan.Breeding science · 2019Article
- Quantitative trait loci associated with short inter-node length in soybean.Breeding science · 2018Article
- The effect of stem growth habit on single seed weight and seed uniformity in soybean (Breeding science · 2018Article
- Identification and dissection of single seed weight QTLs by analysis of seed yield components in soybean.Breeding science · 2018Article
- Transfer of the Rsv3 locus from 'Harosoy' for resistance to soybean mosaic virus strains C and D in Japan.Breeding science · 2016Article
- Identification of quantitative trait loci associated with boiled seed hardness in soybean.Breeding science · 2014Article
- Major QTLs associated with green stem disorder insensitivity of soybean (Glycine max (L.) Merr.).Breeding science · 2014Article
- Quantitative trait loci associated with lodging tolerance in soybean cultivar 'Toyoharuka'.Breeding science · 2014Article
Corrections and comments
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Authors and funding
11 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Among commonly applied molecular markers, simple sequence repeats (SSRs, or microsatellites) possess advantages such as a high level of polymorphism and codominant pattern of inheritance at individual loci. To facilitate systematic and rapid genetic mapping in soybean, we designed a genotyping panel comprised 304 SSR markers selected for allelic diversity and chromosomal location so as to provide wide coverage. Most primer pairs for the markers in the panel were redesigned to yield amplicons of 80-600 bp in multiplex polymerase chain reaction (PCR) and fluorescence-based sequencer analysis, and they were labelled with one of four different fluorescent dyes. Multiplex PCR with sets of six to eight primer pairs per reaction generated allelic data for 283 of the 304 SSR loci in three different mapping populations, with the loci mapping to the same positions as previously determined. Four SSRs on each chromosome were analysed for allelic diversity in 87 diverse soybean germplasms with four-plex PCR. These 80 loci showed an average allele number and polymorphic information content value of 14.8 and 0.78, respectively. The high level of polymorphism, ease of analysis, and high accuracy of the SSR genotyping panel should render it widely applicable to soybean genetics and breeding.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.