ArticleGenome biology2011
A vertebrate case study of the quality of assemblies derived from next-generation sequences.
Article in Genome biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
18 citing papers in PubMed.
- Reconstruction of the transcriptional regulatory networks in the kidney of desert-adapted species.Communications biology · 2025Article
- Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022Review
- Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools.BMC genomics · 2016Article
- Transcriptome Analysis in Domesticated Species: Challenges and Strategies.Bioinformatics and biology insights · 2015Review
- Complex evolutionary trajectories of sex chromosomes across bird taxa.Science (New York, N.Y.) · 2014Article
- Draft sequencing and analysis of the genome of pufferfish Takifugu flavidus.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
- Extensive error in the number of genes inferred from draft genome assemblies.PLoS computational biology · 2014Article
- Sequencing, assembling, and correcting draft genomes using recombinant populations.G3 (Bethesda, Md.) · 2014Article
- Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.PloS one · 2014Article
- Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing.BMC genomics · 2013Article
- Finishing bacterial genome assemblies with Mix.BMC bioinformatics · 2013Article
- A duck RH panel and its potential for assisting NGS genome assembly.BMC genomics · 2012Article
- A beginner's guide to eukaryotic genome annotation.Nature reviews. Genetics · 2012Review
- Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism.PloS one · 2012Article
- Graph accordance of next-generation sequence assemblies.Bioinformatics (Oxford, England) · 2012Article
- Repetitive DNA and next-generation sequencing: computational challenges and solutions.Nature reviews. Genetics · 2011Review
- Emergence and evolution of the glycoprotein hormone and neurotrophin gene families in vertebrates.BMC evolutionary biology · 2011Article
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Corrections and comments
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Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The unparalleled efficiency of next-generation sequencing (NGS) has prompted widespread adoption, but significant problems remain in the use of NGS data for whole genome assembly. We explore the advantages and disadvantages of chicken genome assemblies generated using a variety of sequencing and assembly methodologies. NGS assemblies are equivalent in some ways to a Sanger-based assembly yet deficient in others. Nonetheless, these assemblies are sufficient for the identification of the majority of genes and can reveal novel sequences when compared to existing assembly references.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.