Evidence map›Paper›PMID 21453131›Full record

ArticleAIDS research and human retroviruses2011

Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and African patients living in Italy.

Nazle Mendonca Collaço Véras, Maria Mercedes Santoro, Rebecca R Gray, Andrew J Tatem, Alessandra Lo Presti, Flaminia Olearo, Giulia Cappelli, Vittorio Colizzi, Desiré Takou, Judith Torimiro and 8 more

Open access · greenAbstract read
In one paragraph

Article in AIDS research and human retroviruses, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 3 pooled it
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 3 syntheses or guidelines pooled it, 23 citations in OpenAlex.

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  13. Characterizing HIV transmission networks across the United States.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 4 countries.

Nazle Mendonca Collaço VérasDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida College of Medicine, Gainesville, USA.
Maria Mercedes Santoro
Rebecca R Gray
Andrew J Tatem
Alessandra Lo Presti
Flaminia Olearo
Giulia Cappelli
Vittorio Colizzi
Desiré Takou
Judith Torimiro
Gianluca Russo
Annapaola Callegaro
Romina Salpini
Roberta D'Arrigo
Carlo-Federico Perno
Maureen M Goodenow
Massimo Ciccozzi
Marco Salemi
University of Florida · USUniversity of Rome Tor Vergata · ITCentre International De Reference Chantal Biya · CMAzienda Ospedaliero Universitaria Ospedali Riuniti · ITIstituto Nazionale per le Malattie Infettive Lazzaro Spallanzani · ITNational Research Council · ITSapienza University of Rome · ITUniversidade de Brasília · BRUniversità Campus Bio-Medico · IT

Funding

TRAINING IN THE CELL BIOLOGY AND IMMUNOBIOLOGY OF CANCERT32CA009126 · NCI · UNIVERSITY OF FLORIDA · PI MAY, WILLIAM STRATFORD · 1985 to 2012
$3.5M
Role of HIV-1 Env Diversity in Cellular TropismR01AI065265 · NIAID · UNIVERSITY OF FLORIDA · PI GOODENOW, MAUREEN M · 2005 to 2009
$2.1M
NCI NIH HHS T32 CA09126NIAID NIH HHS R01 AI065265
6 · The paper itself

Abstract

HIV-1 CRF02_AG accounts for >50% of infected individuals in Cameroon. CRF02_AG prevalence has been increasing both in Africa and Europe, particularly in Italy because of migrations from the sub-Saharan region. This study investigated the molecular epidemiology of CRF02_AG in Cameroon by employing Bayesian phylodynamics and analyzed the relationship between HIV-1 CRF02_AG isolates circulating in Italy and those prevalent in Africa to understand the link between the two epidemics. Among 291 Cameroonian reverse transcriptase sequences analyzed, about 70% clustered within three distinct clades, two of which shared a most recent common ancestor, all related to sequences from Western Africa. The major Cameroonian clades emerged during the mid-1970s and slowly spread during the next 30 years. Little or no geographic structure was detected within these clades. One of the major driving forces of the epidemic was likely the high accessibility between locations in Southern Cameroon contributing to the mobility of the population. The remaining Cameroonian sequences and the new strains isolated from Italian patients were interspersed mainly within West and Central African sequences in the tree, indicating a continuous exchange of CRF02_AG viral strains between Cameroon and other African countries, as well as multiple independent introductions in the Italian population. The evaluation of the spread of CRF02_AG may provide significant insight about the future dynamics of the Italian and European epidemic.

Indexed as

Molecular EpidemiologyBayes TheoremCameroonEpidemicsGenetics, PopulationHIV-1HIV InfectionsHIV Reverse TranscriptaseHumansItalyPhylogenySequence Analysis, DNAHIV Reverse Transcriptasereverse transcriptase, Human immunodeficiency virus 1

Identifiers

PMID21453131
PMCPMC3206741
OpenAlexW2077125307

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.