ArticleBioinformatics (Oxford, England)2011
hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.
Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- Peak Scores Significantly Depend on the Relationships between Contextual Signals in ChIP-Seq Peaks.International journal of molecular sciences · 2024Article
- Article
- Intracellular and Intercellular Gene Regulatory Network Inference From Time-Course Individual RNA-Seq.Frontiers in bioinformatics · 2021Article
- ChIPSummitDB: a ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.Database : the journal of biological databases and curation · 2020Article
- Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach.BMC bioinformatics · 2019Article
- Article
- CR2Cancer: a database for chromatin regulators in human cancer.Nucleic acids research · 2018Article
- TFBSbank: a platform to dissect the big data of protein-DNA interaction in human and model species.Nucleic acids research · 2017Article
- Simultaneous Pathway Activity Inference and Gene Expression Analysis Using RNA Sequencing.Cell systems · 2016Article
- ePIANNO: ePIgenomics ANNOtation tool.PloS one · 2016Article
- TRRUST: a reference database of human transcriptional regulatory interactions.Scientific reports · 2015Article
- CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities.Nucleic acids research · 2015Article
- Large differences in global transcriptional regulatory programs of normal and tumor colon cells.BMC cancer · 2014Article
- Myeloid malignancies with chromosome 5q deletions acquire a dependency on an intrachromosomal NF-κB gene network.Cell reports · 2014Article
- PolyaPeak: detecting transcription factor binding sites from ChIP-seq using peak shape information.PloS one · 2014Article
- A general approach for discriminative de novo motif discovery from high-throughput data.Nucleic acids research · 2013Article
- REACTIN: regulatory activity inference of transcription factors underlying human diseases with application to breast cancer.BMC genomics · 2013Article
- The impact of trans-regulation on the evolutionary rates of metazoan proteins.Nucleic acids research · 2013Article
- ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking.BMC bioinformatics · 2013Article
- Novel semantic similarity measure improves an integrative approach to predicting gene functional associations.BMC systems biology · 2013Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
unlabelledhmChIP is a database of genome-wide chromatin immunoprecipitation (ChIP) data in human and mouse. Currently, the database contains 2016 samples from 492 ChIP-seq and ChIP-chip experiments, representing a total of 170 proteins and 11 069 914 protein-DNA interactions. A web server provides interface for database query. Protein-DNA binding intensities can be retrieved from individual samples for user-provided genomic regions. The retrieved intensities can be used to cluster samples and genomic regions to facilitate exploration of combinatorial patterns, cell-type dependencies, and cross-sample variability of protein-DNA interactions. AVAILABILITY: http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.