Evidence map›Paper›PMID 21450525›Full record

ArticleJournal of pediatric urology2011

Exome capture and massively parallel sequencing identifies a novel HPSE2 mutation in a Saudi Arabian child with Ochoa (urofacial) syndrome.

Wisam Al Badr, Suha Al Bader, Edgar Otto, Friedhelm Hildebrandt, Todd Ackley, Weiping Peng, Jishu Xu, Jun Li, Kailey M Owens, David Bloom and 1 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Journal of pediatric urology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Expanding theFrontiers in genetics · 2022
    Article
  2. Article
  3. Article
  4. Urinary tract effects of HPSE2 mutations.Journal of the American Society of Nephrology : JASN · 2015
    Article
  5. Article
  6. Article
  7. Review
  8. Genetics of human congenital urinary bladder disease.Pediatric nephrology (Berlin, Germany) · 2014
    Review
  9. Is there a role for endogenous retroviruses to mediate long-term adaptive phenotypic response upon environmental inputs?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
  10. Review
  11. Article
  12. Lower urinary tract development and disease.Wiley interdisciplinary reviews. Systems biology and medicine
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Wisam Al BadrDivision of Nephrology, King Fahad Specialist Hospital Dammam, Dammam, Saudi Arabia.
Suha Al Bader
Edgar Otto
Friedhelm Hildebrandt
Todd Ackley
Weiping Peng
Jishu Xu
Jun Li
Kailey M Owens
David Bloom
Jeffrey W Innis
University of Michigan–Ann Arbor · USKing Fahad Specialist Hospital · SA

Funding

New genes and pathomechanisms of congenital abnormalities of the kidney (CAKUT)R01DK088767 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2010 to 2019
$3.4M
Exon capture and large-scale sequencing for disease-cause identification, early dRC1DK086542 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2009 to 2010
$981k
NIDDK NIH HHS R01 DK088767NIDDK NIH HHS RC1 DK086542NIDDK NIH HHS RC1-DK086542-01
6 · The paper itself

Abstract

We describe a child of Middle Eastern descent by first-cousin coupling with idiopathic neurogenic bladder and high-grade vesicoureteral reflux at 1 year of age, whose characteristic facial grimace led to the diagnosis of Ochoa (urofacial) syndrome at age 5 years. We used homozygosity mapping, exome capture and paired-end sequencing to identify the disease causing mutation in the proband. We reviewed the literature with respect to the urologic manifestations of Ochoa syndrome. A large region of marker homozygosity was observed at 10q24, consistent with known autosomal recessive inheritance, family consanguinity and previous genetic mapping in other families with Ochoa syndrome. A homozygous mutation was identified in the proband in HPSE2: c.1374_1378delTGTGC, a deletion of 5 nucleotides in exon 10 that is predicted to lead to a frameshift followed by replacement of 132 C-terminal amino acids with 153 novel amino acids (p.Ala458Alafsdel132ins153). This mutation is novel relative to very recently published mutations in HPSE2 in other families. Early intervention and recognition of Ochoa syndrome with control of risk factors and close surveillance will decrease complications and renal failure.

Indexed as

MutationChildChromosome MappingDiagnosis, DifferentialDNA Mutational AnalysisExomeFaciesFemaleFollow-Up StudiesGlucuronidaseHeparanaseHomozygoteHumansPedigreeSaudi ArabiaUrologic DiseasesGlucuronidaseHeparanase

Identifiers

PMID21450525
PMCPMC3157539
OpenAlexW2035605239

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.