Evidence map›Paper›PMID 21448452›Full record

ArticlePloS one2011

Metabolites of purine nucleoside phosphorylase (NP) in serum have the potential to delineate pancreatic adenocarcinoma.

Shaiju K Vareed, Vadiraja B Bhat, Christopher Thompson, Vihas T Vasu, Damian Fermin, Hyungwon Choi, Chad J Creighton, Sitaram Gayatri, Ling Lan, Nagireddy Putluri and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 1 country.

Shaiju K VareedDepartment of Biochemistry and Molecular Biology and Cancer Center, Medical College of Georgia, Augusta, Georgia, United States of America.
Vadiraja B Bhat
Christopher Thompson
Vihas T Vasu
Damian Fermin
Hyungwon Choi
Chad J Creighton
Sitaram Gayatri
Ling Lan
Nagireddy Putluri
Gagan Singh Thangjam
Punit Kaur
Mohsen Shabahang
Judith G Giri
Alexey I Nesvizhskii
Alexander A A Asea
Anil G Cashikar
Arundhati Rao
James McLoughlin
Arun Sreekumar
Augusta University · USScott & White Memorial Hospital · USUniversity of Michigan–Ann Arbor · USBaylor College of Medicine · USIllinois Institute of Technology · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
Integrative Metabolomics of Prostate Cancer ProgressionR01CA133458 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SREEKUMAR, ARUN · 2008 to 2012
$1.6M
Analysis and Statistical Validation of Proteomic DatasetsR01CA126239 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NESVIZHSKII, ALEXEY I · 2006 to 2009
$1.2M
Integromics with Application to Prostate Cancer ProgressionRC1CA145444 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MICHAILIDIS, GEORGE · 2009 to 2010
$999k
Metabolomic Markers for Early Detection of Prostate CancerR03CA139489 · NCI · BAYLOR COLLEGE OF MEDICINE · PI SREEKUMAR, ARUN · 2009 to 2010
$147k
NCI NIH HHS P30 CA125123NCI NIH HHS R01 CA-126239NCI NIH HHS R01 CA126239NCI NIH HHS R01CA13345NCI NIH HHS R01 CA133458NCI NIH HHS R03 CA139489NCI NIH HHS R03 CA139489-01NCI NIH HHS RC1 CA145444PHS HHS PSRP00030CSPHS HHS RCA145444A
6 · The paper itself

Abstract

Pancreatic Adenocarcinoma (PDAC), the fourth highest cause of cancer related deaths in the United States, has the most aggressive presentation resulting in a very short median survival time for the affected patients. Early detection of PDAC is confounded by lack of specific markers that has motivated the use of high throughput molecular approaches to delineate potential biomarkers. To pursue identification of a distinct marker, this study profiled the secretory proteome in 16 PDAC, 2 carcinoma in situ (CIS) and 7 benign patients using label-free mass spectrometry coupled to 1D-SDS-PAGE and Strong Cation-Exchange Chromatography (SCX). A total of 431 proteins were detected of which 56 were found to be significantly elevated in PDAC. Included in this differential set were Parkinson disease autosomal recessive, early onset 7 (PARK 7) and Alpha Synuclein (aSyn), both of which are known to be pathognomonic to Parkinson's disease as well as metabolic enzymes like Purine Nucleoside Phosphorylase (NP) which has been exploited as therapeutic target in cancers. Tissue Microarray analysis confirmed higher expression of aSyn and NP in ductal epithelia of pancreatic tumors compared to benign ducts. Furthermore, extent of both aSyn and NP staining positively correlated with tumor stage and perineural invasion while their intensity of staining correlated with the existence of metastatic lesions in the PDAC tissues. From the biomarker perspective, NP protein levels were higher in PDAC sera and furthermore serum levels of its downstream metabolites guanosine and adenosine were able to distinguish PDAC from benign in an unsupervised hierarchical classification model. Overall, this study for the first time describes elevated levels of aSyn in PDAC as well as highlights the potential of evaluating NP protein expression and levels of its downstream metabolites to develop a multiplex panel for non-invasive detection of PDAC.

Indexed as

BiomarkersHumansNeoplasm ProteinsPancreatic NeoplasmsProteomeProteomicsPurine-Nucleoside PhosphorylaseReproducibility of ResultsBiomarkersNeoplasm ProteinsProteomePurine-Nucleoside Phosphorylase

Identifiers

PMID21448452
PMCPMC3063153
OpenAlexW2053247639

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.